Analysis of interatomic Contacts of Structural Units in PDB entry:
5UIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UIM entry

There are 2 chains in PDB entry 5UIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 398
B
 MET 1MET 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5UIM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 22Right-handed alpha
Helix 2
AA2
A
45 53Right-handed alpha
Helix 3
AA3
A
59 65Right-handed alpha
Helix 4
AA4
A
81 85Right-handed 310
Helix 5
AA5
A
108 113Right-handed alpha
Helix 6
AA6
A
147 172Right-handed alpha
Helix 7
AA7
A
189 193Right-handed 310
Helix 8
AA8
A
205 217Right-handed alpha
Helix 9
AA9
A
271 282Right-handed alpha
Helix 10
AB1
A
283 291Right-handed alpha
Helix 11
AB2
A
293 299Right-handed 310
Helix 12
AB3
A
306 314Right-handed alpha
Helix 13
AB4
A
316 327Right-handed alpha
Helix 14
AB5
A
339 352Right-handed alpha
Helix 15
AB6
A
356 363Right-handed alpha
Helix 16
AB7
A
376 385Right-handed alpha
Helix 17
AB8
A
386 397Right-handed alpha
Helix 18
AB9
B
8 23Right-handed alpha
Helix 19
AC1
B
45 53Right-handed alpha
Helix 20
AC2
B
59 65Right-handed alpha
Helix 21
AC3
B
81 85Right-handed 310
Helix 22
AC4
B
108 113Right-handed alpha
Helix 23
AC5
B
147 173Right-handed alpha
Helix 24
AC6
B
189 193Right-handed 310
Helix 25
AC7
B
194 198Right-handed 310
Helix 26
AC8
B
205 217Right-handed alpha
Helix 27
AC9
B
271 279Right-handed alpha
Helix 28
AD1
B
283 291Right-handed alpha
Helix 29
AD2
B
293 299Right-handed 310
Helix 30
AD3
B
306 314Right-handed alpha
Helix 31
AD4
B
316 326Right-handed alpha
Helix 32
AD5
B
339 352Right-handed alpha
Helix 33
AD6
B
356 363Right-handed alpha
Helix 34
AD7
B
376 384Right-handed alpha
Helix 35
AD8
B
386 395Right-handed alpha
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There are 6 sheets in PDB entry 5UIM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
2 7parallel
Strand 3
A
69 74parallel
Strand 4
A
90 94parallel
Strand 5
A
117 124anti-parallel
Strand 6
A
134 141anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
A
187 188parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 236first strand
Strand 2
A
265 269anti-parallel
Strand 3
A
255 258anti-parallel
Strand 4
A
248 251anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 32first strand
Strand 2
B
2 7parallel
Strand 3
B
69 74parallel
Strand 4
B
90 94parallel
Strand 5
B
117 124anti-parallel
Strand 6
B
134 141anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 103first strand
Strand 2
B
187 188parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 236first strand
Strand 2
B
265 269anti-parallel
Strand 3
B
255 258anti-parallel
Strand 4
B
248 252anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il