Analysis of interatomic Contacts of Structural Units in PDB entry:
5UIQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UIQ entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 12 chains in PDB entry 5UIQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 164	GLN 341
A	VAL 343	MET 344
A	ARG 347	ALA 459
B	ARG 164	SER 336
B	VAL 343	MET 344
B	ARG 347	THR 458
C	ARG 164	GLN 341
C	VAL 343	MET 344
C	ARG 347	THR 458
D	ARG 164	ALA 335
D	VAL 343	MET 344
D	ARG 347	THR 458

There are 51 helices in PDB entry 5UIQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	169	177	Right-handed alpha
Helix 2	AA2	A	228	240	Right-handed alpha
Helix 3	AA3	A	269	275	Right-handed alpha
Helix 4	AA4	A	276	280	Right-handed 310
Helix 5	AA5	A	284	305	Right-handed alpha
Helix 6	AA6	A	356	361	Right-handed alpha
Helix 7	AA7	A	365	383	Right-handed alpha
Helix 8	AA8	A	395	397	Right-handed 310
Helix 9	AA9	A	398	405	Right-handed alpha
Helix 10	AB1	A	409	413	Right-handed 310
Helix 11	AB2	A	422	437	Right-handed alpha
Helix 12	AB3	A	440	444	Right-handed 310
Helix 13	AB4	A	446	457	Right-handed alpha
Helix 14	AB5	B	169	177	Right-handed alpha
Helix 15	AB6	B	225	240	Right-handed alpha
Helix 16	AB7	B	269	275	Right-handed alpha
Helix 17	AB8	B	276	280	Right-handed 310
Helix 18	AB9	B	284	305	Right-handed alpha
Helix 19	AC1	B	356	361	Right-handed alpha
Helix 20	AC2	B	365	383	Right-handed alpha
Helix 21	AC3	B	395	397	Right-handed 310
Helix 22	AC4	B	398	404	Right-handed alpha
Helix 23	AC5	B	409	413	Right-handed 310
Helix 24	AC6	B	422	437	Right-handed alpha
Helix 25	AC7	B	440	444	Right-handed 310
Helix 26	AC8	B	446	457	Right-handed alpha
Helix 27	AC9	C	169	177	Right-handed alpha
Helix 28	AD1	C	184	188	Right-handed 310
Helix 29	AD2	C	223	240	Right-handed alpha
Helix 30	AD3	C	269	275	Right-handed alpha
Helix 31	AD4	C	276	280	Right-handed 310
Helix 32	AD5	C	284	305	Right-handed alpha
Helix 33	AD6	C	365	383	Right-handed alpha
Helix 34	AD7	C	395	397	Right-handed 310
Helix 35	AD8	C	398	404	Right-handed alpha
Helix 36	AD9	C	409	413	Right-handed 310
Helix 37	AE1	C	422	437	Right-handed alpha
Helix 38	AE2	C	440	444	Right-handed 310
Helix 39	AE3	C	446	458	Right-handed alpha
Helix 40	AE4	D	169	177	Right-handed alpha
Helix 41	AE5	D	184	188	Right-handed 310
Helix 42	AE6	D	227	240	Right-handed alpha
Helix 43	AE7	D	269	275	Right-handed alpha
Helix 44	AE8	D	276	280	Right-handed 310
Helix 45	AE9	D	284	305	Right-handed alpha
Helix 46	AF1	D	365	383	Right-handed alpha
Helix 47	AF2	D	396	404	Right-handed alpha
Helix 48	AF3	D	409	413	Right-handed 310
Helix 49	AF4	D	422	437	Right-handed alpha
Helix 50	AF5	D	440	444	Right-handed 310
Helix 51	AF6	D	446	457	Right-handed alpha

There are 15 sheets in PDB entry 5UIQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	167	first strand
Strand 2	A	248	251	parallel
Strand 3	A	260	263	anti-parallel
Strand 4	A	210	215	anti-parallel
Strand 5	A	198	203	anti-parallel
Strand 6	A	193	195	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	308	first strand
Strand 2	A	334	335	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	319	first strand
Strand 2	A	325	327	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	344	first strand
Strand 2	A	363	364	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	167	first strand
Strand 2	B	248	252	parallel
Strand 3	B	259	263	anti-parallel
Strand 4	B	210	215	anti-parallel
Strand 5	B	198	203	anti-parallel
Strand 6	B	191	193	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	308	first strand
Strand 2	B	334	335	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	319	first strand
Strand 2	B	325	327	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	344	first strand
Strand 2	B	363	364	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	167	first strand
Strand 2	C	248	252	parallel
Strand 3	C	258	263	anti-parallel
Strand 4	C	208	215	anti-parallel
Strand 5	C	198	205	anti-parallel
Strand 6	C	191	193	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	307	308	first strand
Strand 2	C	334	335	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	317	319	first strand
Strand 2	C	325	327	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	343	344	first strand
Strand 2	C	363	364	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	167	first strand
Strand 2	D	248	252	parallel
Strand 3	D	258	263	anti-parallel
Strand 4	D	208	215	anti-parallel
Strand 5	D	198	205	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	317	319	first strand
Strand 2	D	325	327	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	343	344	first strand
Strand 2	D	363	364	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UIQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UIQ