Analysis of interatomic Contacts of Structural Units in PDB entry:
5UIR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UIR entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 5UIR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 165MET 344
A
 ARG 347THR 458
B
 ARG 164SER 336
B
 VAL 343MET 344
B
 ARG 347THR 458
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 5UIR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
171 177Right-handed alpha
Helix 2
AA2
A
222 240Right-handed alpha
Helix 3
AA3
A
269 276Right-handed alpha
Helix 4
AA4
A
277 280Right-handed 310
Helix 5
AA5
A
284 305Right-handed alpha
Helix 6
AA6
A
313 315Right-handed 310
Helix 7
AA7
A
351 355Right-handed 310
Helix 8
AA8
A
356 361Right-handed alpha
Helix 9
AA9
A
366 383Right-handed alpha
Helix 10
AB1
A
397 406Right-handed alpha
Helix 11
AB2
A
410 414Right-handed 310
Helix 12
AB3
A
422 437Right-handed alpha
Helix 13
AB4
A
440 444Right-handed 310
Helix 14
AB5
A
446 456Right-handed alpha
Helix 15
AB6
B
169 177Right-handed alpha
Helix 16
AB7
B
225 240Right-handed alpha
Helix 17
AB8
B
269 276Right-handed alpha
Helix 18
AB9
B
277 280Right-handed 310
Helix 19
AC1
B
284 305Right-handed alpha
Helix 20
AC2
B
313 315Right-handed 310
Helix 21
AC3
B
351 355Right-handed 310
Helix 22
AC4
B
356 361Right-handed alpha
Helix 23
AC5
B
366 383Right-handed alpha
Helix 24
AC6
B
395 397Right-handed 310
Helix 25
AC7
B
398 405Right-handed alpha
Helix 26
AC8
B
410 414Right-handed 310
Helix 27
AC9
B
422 437Right-handed alpha
Helix 28
AD1
B
440 444Right-handed 310
Helix 29
AD2
B
446 457Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5UIR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 167first strand
Strand 2
A
248 252parallel
Strand 3
A
259 263anti-parallel
Strand 4
A
208 215anti-parallel
Strand 5
A
198 205anti-parallel
Strand 6
A
191 195anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 319first strand
Strand 2
A
325 327anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 168first strand
Strand 2
B
248 252parallel
Strand 3
B
259 263anti-parallel
Strand 4
B
210 215anti-parallel
Strand 5
B
198 201anti-parallel
Strand 6
B
191 194anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
307 308first strand
Strand 2
B
334 335anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 319first strand
Strand 2
B
325 327anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
343 344first strand
Strand 2
B
363 364anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il