Analysis of interatomic Contacts of Structural Units in PDB entry:
5UJ7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UJ7 entry

There are 4 chains in PDB entry 5UJ7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 490GLU 861
C
 LEU 17SER 432
E
 VAL 8VAL 268
B
 GLU 490GLY 789
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are109 helices in PDB entry 5UJ7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
493 498Right-handed alpha
Helix 2
AA2
A
508 524Right-handed alpha
Helix 3
AA3
A
539 557Right-handed alpha
Helix 4
AA4
A
577 587Right-handed alpha
Helix 5
AA5
A
593 605Right-handed alpha
Helix 6
AA6
A
622 626Right-handed 310
Helix 7
AA7
A
630 639Right-handed alpha
Helix 8
AA8
A
640 642Right-handed 310
Helix 9
AA9
A
657 661Right-handed 310
Helix 10
AB1
A
682 693Right-handed alpha
Helix 11
AB2
A
706 713Right-handed alpha
Helix 12
AB3
A
719 735Right-handed alpha
Helix 13
AB4
A
747 757Right-handed alpha
Helix 14
AB5
A
761 770Right-handed alpha
Helix 15
AB6
A
771 789Right-handed alpha
Helix 16
AB7
A
795 809Right-handed alpha
Helix 17
AB8
A
815 829Right-handed alpha
Helix 18
AB9
A
836 842Right-handed 310
Helix 19
AC1
A
850 860Right-handed alpha
Helix 20
AC2
C
18 29Right-handed alpha
Helix 21
AC3
C
40 56Right-handed alpha
Helix 22
AC4
C
72 86Right-handed alpha
Helix 23
AC5
C
87 94Right-handed alpha
Helix 24
AC6
C
106 118Right-handed alpha
Helix 25
AC7
C
131 141Right-handed alpha
Helix 26
AC8
C
160 165Right-handed alpha
Helix 27
AC9
C
170 183Right-handed alpha
Helix 28
AD1
C
197 202Right-handed 310
Helix 29
AD2
C
203 210Right-handed alpha
Helix 30
AD3
C
222 235Right-handed alpha
Helix 31
AD4
C
245 258Right-handed alpha
Helix 32
AD5
C
259 271Right-handed alpha
Helix 33
AD6
C
275 289Right-handed alpha
Helix 34
AD7
C
298 311Right-handed alpha
Helix 35
AD8
C
312 320Right-handed alpha
Helix 36
AD9
C
322 339Right-handed alpha
Helix 37
AE1
C
345 358Right-handed alpha
Helix 38
AE2
C
368 382Right-handed alpha
Helix 39
AE3
C
407 418Right-handed alpha
Helix 40
AE4
C
422 430Right-handed alpha
Helix 41
AE5
E
11 23Right-handed alpha
Helix 42
AE6
E
38 41Right-handed 310
Helix 43
AE7
E
42 54Right-handed alpha
Helix 44
AE8
E
68 79Right-handed alpha
Helix 45
AE9
E
99 109Right-handed alpha
Helix 46
AF1
E
127 133Right-handed 310
Helix 47
AF2
E
136 143Right-handed alpha
Helix 48
AF3
E
143 149Right-handed alpha
Helix 49
AF4
E
161 165Right-handed 310
Helix 50
AF5
E
183 192Right-handed alpha
Helix 51
AF6
E
200 216Right-handed alpha
Helix 52
AF7
E
221 232Right-handed alpha
Helix 53
AF8
E
232 242Right-handed alpha
Helix 54
AF9
E
253 266Right-handed alpha
Helix 55
AG1
B
493 498Right-handed alpha
Helix 56
AG2
B
508 524Right-handed alpha
Helix 57
AG3
B
539 557Right-handed alpha
Helix 58
AG4
B
571 573Right-handed 310
Helix 59
AG5
B
577 587Right-handed alpha
Helix 60
AG6
B
593 605Right-handed alpha
Helix 61
AG7
B
622 626Right-handed 310
Helix 62
AG8
B
630 639Right-handed alpha
Helix 63
AG9
B
640 642Right-handed 310
Helix 64
AH1
B
657 661Right-handed 310
Helix 65
AH2
B
682 693Right-handed alpha
Helix 66
AH3
B
706 713Right-handed alpha
Helix 67
AH4
B
719 735Right-handed alpha
Helix 68
AH5
B
747 757Right-handed alpha
Helix 69
AH6
B
761 770Right-handed alpha
Helix 70
AH7
B
771 789Right-handed alpha
Helix 71
AH8
B
795 809Right-handed alpha
Helix 72
AH9
B
815 829Right-handed alpha
Helix 73
AI1
B
836 842Right-handed 310
Helix 74
AI2
B
850 859Right-handed alpha
Helix 75
AI3
D
18 29Right-handed alpha
Helix 76
AI4
D
40 57Right-handed alpha
Helix 77
AI5
D
72 86Right-handed alpha
Helix 78
AI6
D
87 94Right-handed alpha
Helix 79
AI7
D
106 118Right-handed alpha
Helix 80
AI8
D
131 141Right-handed alpha
Helix 81
AI9
D
160 165Right-handed alpha
Helix 82
AJ1
D
170 182Right-handed alpha
Helix 83
AJ2
D
197 202Right-handed 310
Helix 84
AJ3
D
203 210Right-handed alpha
Helix 85
AJ4
D
222 235Right-handed alpha
Helix 86
AJ5
D
245 258Right-handed alpha
Helix 87
AJ6
D
259 271Right-handed alpha
Helix 88
AJ7
D
275 289Right-handed alpha
Helix 89
AJ8
D
298 311Right-handed alpha
Helix 90
AJ9
D
312 320Right-handed alpha
Helix 91
AK1
D
322 339Right-handed alpha
Helix 92
AK2
D
345 357Right-handed alpha
Helix 93
AK3
D
368 382Right-handed alpha
Helix 94
AK4
D
407 418Right-handed alpha
Helix 95
AK5
D
422 432Right-handed alpha
Helix 96
AK6
F
11 23Right-handed alpha
Helix 97
AK7
F
38 41Right-handed 310
Helix 98
AK8
F
42 54Right-handed alpha
Helix 99
AK9
F
68 79Right-handed alpha
Helix 100
AL1
F
99 109Right-handed alpha
Helix 101
AL2
F
127 133Right-handed 310
Helix 102
AL3
F
136 143Right-handed alpha
Helix 103
AL4
F
143 149Right-handed alpha
Helix 104
AL5
F
161 165Right-handed 310
Helix 105
AL6
F
183 194Right-handed alpha
Helix 106
AL7
F
200 216Right-handed alpha
Helix 107
AL8
F
221 232Right-handed alpha
Helix 108
AL9
F
232 242Right-handed alpha
Helix 109
AM1
F
253 266Right-handed alpha
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There are 10 sheets in PDB entry 5UJ7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
565 569first strand
Strand 2
A
616 620parallel
Strand 3
A
648 652parallel
Strand 4
A
528 534parallel
Strand 5
A
675 678parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
793 794first strand
Strand 2
A
844 847anti-parallel
Strand 3
A
832 834anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
95 100first strand
Strand 2
C
154 159parallel
Strand 3
C
187 193parallel
Strand 4
C
61 66parallel
Strand 5
C
215 217parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
385 387first strand
Strand 2
C
402 404anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
58 62first strand
Strand 2
E
120 125parallel
Strand 3
E
152 158parallel
Strand 4
E
32 36parallel
Strand 5
E
175 178parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
565 569first strand
Strand 2
B
616 620parallel
Strand 3
B
648 652parallel
Strand 4
B
528 534parallel
Strand 5
B
675 678parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
793 794first strand
Strand 2
B
844 847anti-parallel
Strand 3
B
832 834anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
95 100first strand
Strand 2
D
154 159parallel
Strand 3
D
187 193parallel
Strand 4
D
61 66parallel
Strand 5
D
215 217parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
385 387first strand
Strand 2
D
402 404anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
58 62first strand
Strand 2
F
120 125parallel
Strand 3
F
152 157parallel
Strand 4
F
32 36parallel
Strand 5
F
175 178parallel
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