Analysis of interatomic Contacts of Structural Units in PDB entry:
5UJ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UJ8 entry

There are 8 chains in PDB entry 5UJ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 41	TRP 709
B	LYS 41	TRP 709
C	LYS 41	TRP 709
D	LYS 41	TRP 709
E	SER 284	VAL 466
F	SER 284	VAL 466
G	SER 284	VAL 466
H	SER 284	VAL 466

There are149 helices in PDB entry 5UJ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	81	Right-handed alpha
Helix 2	AA2	A	111	113	Right-handed 310
Helix 3	AA3	A	114	128	Right-handed alpha
Helix 4	AA4	A	144	158	Right-handed alpha
Helix 5	AA5	A	160	164	Right-handed 310
Helix 6	AA6	A	189	193	Right-handed 310
Helix 7	AA7	A	196	202	Right-handed alpha
Helix 8	AA8	A	226	240	Right-handed alpha
Helix 9	AA9	A	255	263	Right-handed alpha
Helix 10	AB1	A	264	271	Right-handed alpha
Helix 11	AB2	A	280	292	Right-handed alpha
Helix 12	AB3	A	303	316	Right-handed alpha
Helix 13	AB4	A	320	337	Right-handed alpha
Helix 14	AB5	A	338	345	Right-handed 310
Helix 15	AB6	A	347	358	Right-handed alpha
Helix 16	AB7	A	359	367	Right-handed alpha
Helix 17	AB8	A	372	378	Right-handed alpha
Helix 18	AB9	A	381	383	Right-handed 310
Helix 19	AC1	A	384	389	Right-handed alpha
Helix 20	AC2	A	390	424	Right-handed alpha
Helix 21	AC3	A	434	445	Right-handed alpha
Helix 22	AC4	A	450	464	Right-handed alpha
Helix 23	AC5	A	464	485	Right-handed alpha
Helix 24	AC6	A	492	506	Right-handed alpha
Helix 25	AC7	A	549	560	Right-handed alpha
Helix 26	AC8	A	584	592	Right-handed alpha
Helix 27	AC9	A	595	606	Right-handed alpha
Helix 28	AD1	A	629	640	Right-handed alpha
Helix 29	AD2	A	645	651	Right-handed alpha
Helix 30	AD3	A	651	657	Right-handed alpha
Helix 31	AD4	A	678	691	Right-handed alpha
Helix 32	AD5	B	42	81	Right-handed alpha
Helix 33	AD6	B	111	113	Right-handed 310
Helix 34	AD7	B	114	128	Right-handed alpha
Helix 35	AD8	B	144	158	Right-handed alpha
Helix 36	AD9	B	160	164	Right-handed 310
Helix 37	AE1	B	189	193	Right-handed 310
Helix 38	AE2	B	196	202	Right-handed alpha
Helix 39	AE3	B	226	240	Right-handed alpha
Helix 40	AE4	B	255	263	Right-handed alpha
Helix 41	AE5	B	264	271	Right-handed alpha
Helix 42	AE6	B	280	292	Right-handed alpha
Helix 43	AE7	B	303	316	Right-handed alpha
Helix 44	AE8	B	320	337	Right-handed alpha
Helix 45	AE9	B	338	345	Right-handed 310
Helix 46	AF1	B	347	358	Right-handed alpha
Helix 47	AF2	B	359	367	Right-handed alpha
Helix 48	AF3	B	372	378	Right-handed alpha
Helix 49	AF4	B	381	383	Right-handed 310
Helix 50	AF5	B	384	389	Right-handed alpha
Helix 51	AF6	B	390	424	Right-handed alpha
Helix 52	AF7	B	434	445	Right-handed alpha
Helix 53	AF8	B	450	464	Right-handed alpha
Helix 54	AF9	B	464	485	Right-handed alpha
Helix 55	AG1	B	492	506	Right-handed alpha
Helix 56	AG2	B	550	560	Right-handed alpha
Helix 57	AG3	B	584	592	Right-handed alpha
Helix 58	AG4	B	595	606	Right-handed alpha
Helix 59	AG5	B	629	640	Right-handed alpha
Helix 60	AG6	B	645	651	Right-handed alpha
Helix 61	AG7	B	652	657	Right-handed alpha
Helix 62	AG8	B	678	691	Right-handed alpha
Helix 63	AG9	C	42	81	Right-handed alpha
Helix 64	AH1	C	111	113	Right-handed 310
Helix 65	AH2	C	114	128	Right-handed alpha
Helix 66	AH3	C	144	158	Right-handed alpha
Helix 67	AH4	C	160	164	Right-handed 310
Helix 68	AH5	C	189	193	Right-handed 310
Helix 69	AH6	C	196	202	Right-handed alpha
Helix 70	AH7	C	226	240	Right-handed alpha
Helix 71	AH8	C	255	263	Right-handed alpha
Helix 72	AH9	C	264	272	Right-handed alpha
Helix 73	AI1	C	280	292	Right-handed alpha
Helix 74	AI2	C	303	316	Right-handed alpha
Helix 75	AI3	C	320	337	Right-handed alpha
Helix 76	AI4	C	338	345	Right-handed 310
Helix 77	AI5	C	347	358	Right-handed alpha
Helix 78	AI6	C	359	367	Right-handed alpha
Helix 79	AI7	C	372	378	Right-handed alpha
Helix 80	AI8	C	384	389	Right-handed alpha
Helix 81	AI9	C	390	424	Right-handed alpha
Helix 82	AJ1	C	434	445	Right-handed alpha
Helix 83	AJ2	C	450	464	Right-handed alpha
Helix 84	AJ3	C	464	485	Right-handed alpha
Helix 85	AJ4	C	492	506	Right-handed alpha
Helix 86	AJ5	C	550	560	Right-handed alpha
Helix 87	AJ6	C	584	592	Right-handed alpha
Helix 88	AJ7	C	595	606	Right-handed alpha
Helix 89	AJ8	C	629	640	Right-handed alpha
Helix 90	AJ9	C	645	651	Right-handed alpha
Helix 91	AK1	C	651	657	Right-handed alpha
Helix 92	AK2	C	678	691	Right-handed alpha
Helix 93	AK3	D	42	81	Right-handed alpha
Helix 94	AK4	D	111	113	Right-handed 310
Helix 95	AK5	D	114	128	Right-handed alpha
Helix 96	AK6	D	144	158	Right-handed alpha
Helix 97	AK7	D	160	164	Right-handed 310
Helix 98	AK8	D	196	202	Right-handed alpha
Helix 99	AK9	D	226	240	Right-handed alpha
Helix 100	AL1	D	255	263	Right-handed alpha
Helix 101	AL2	D	264	272	Right-handed alpha
Helix 102	AL3	D	280	292	Right-handed alpha
Helix 103	AL4	D	303	316	Right-handed alpha
Helix 104	AL5	D	320	337	Right-handed alpha
Helix 105	AL6	D	338	345	Right-handed 310
Helix 106	AL7	D	347	358	Right-handed alpha
Helix 107	AL8	D	359	367	Right-handed alpha
Helix 108	AL9	D	372	378	Right-handed alpha
Helix 109	AM1	D	381	389	Right-handed alpha
Helix 110	AM2	D	390	424	Right-handed alpha
Helix 111	AM3	D	434	445	Right-handed alpha
Helix 112	AM4	D	450	464	Right-handed alpha
Helix 113	AM5	D	464	485	Right-handed alpha
Helix 114	AM6	D	492	506	Right-handed alpha
Helix 115	AM7	D	550	560	Right-handed alpha
Helix 116	AM8	D	584	592	Right-handed alpha
Helix 117	AM9	D	595	606	Right-handed alpha
Helix 118	AN1	D	629	640	Right-handed alpha
Helix 119	AN2	D	645	651	Right-handed alpha
Helix 120	AN3	D	651	657	Right-handed alpha
Helix 121	AN4	D	678	691	Right-handed alpha
Helix 122	AN5	E	285	308	Right-handed alpha
Helix 123	AN6	E	319	329	Right-handed alpha
Helix 124	AN7	E	347	357	Right-handed alpha
Helix 125	AN8	E	368	381	Right-handed alpha
Helix 126	AN9	E	402	415	Right-handed alpha
Helix 127	AO1	E	428	433	Right-handed alpha
Helix 128	AO2	E	434	441	Right-handed alpha
Helix 129	AO3	F	285	308	Right-handed alpha
Helix 130	AO4	F	319	329	Right-handed alpha
Helix 131	AO5	F	347	358	Right-handed alpha
Helix 132	AO6	F	368	381	Right-handed alpha
Helix 133	AO7	F	404	415	Right-handed alpha
Helix 134	AO8	F	428	433	Right-handed alpha
Helix 135	AO9	F	434	441	Right-handed alpha
Helix 136	AP1	G	285	308	Right-handed alpha
Helix 137	AP2	G	319	329	Right-handed alpha
Helix 138	AP3	G	347	358	Right-handed alpha
Helix 139	AP4	G	368	381	Right-handed alpha
Helix 140	AP5	G	404	415	Right-handed alpha
Helix 141	AP6	G	428	433	Right-handed alpha
Helix 142	AP7	G	434	441	Right-handed alpha
Helix 143	AP8	H	286	308	Right-handed alpha
Helix 144	AP9	H	319	329	Right-handed alpha
Helix 145	AQ1	H	347	358	Right-handed alpha
Helix 146	AQ2	H	368	381	Right-handed alpha
Helix 147	AQ3	H	404	415	Right-handed alpha
Helix 148	AQ4	H	428	433	Right-handed alpha
Helix 149	AQ5	H	434	441	Right-handed alpha

There are 20 sheets in PDB entry 5UJ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	250	first strand
Strand 2	A	103	104	parallel
Strand 3	A	274	275	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	136	first strand
Strand 2	A	217	219	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	302	first strand
Strand 2	A	581	582	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	696	697	first strand
Strand 2	A	703	704	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	104	first strand
Strand 2	B	249	250	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	136	first strand
Strand 2	B	217	219	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	302	first strand
Strand 2	B	581	582	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	696	697	first strand
Strand 2	B	703	704	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	250	first strand
Strand 2	C	103	104	parallel
Strand 3	C	274	275	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	136	first strand
Strand 2	C	217	219	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	302	first strand
Strand 2	C	581	582	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	696	697	first strand
Strand 2	C	703	704	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	250	first strand
Strand 2	D	103	104	parallel
Strand 3	D	274	275	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	136	first strand
Strand 2	D	217	219	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	302	first strand
Strand 2	D	581	582	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	696	697	first strand
Strand 2	D	703	704	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	336	340	first strand
Strand 2	E	388	393	parallel
Strand 3	E	418	424	parallel
Strand 4	E	310	314	parallel
Strand 5	E	443	446	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	336	340	first strand
Strand 2	F	388	393	parallel
Strand 3	F	418	424	parallel
Strand 4	F	310	314	parallel
Strand 5	F	443	446	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	336	340	first strand
Strand 2	G	388	393	parallel
Strand 3	G	418	424	parallel
Strand 4	G	310	314	parallel
Strand 5	G	443	446	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	336	340	first strand
Strand 2	H	388	393	parallel
Strand 3	H	418	424	parallel
Strand 4	H	310	314	parallel
Strand 5	H	443	446	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UJ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UJ8