Analysis of interatomic Contacts of Structural Units in PDB entry:
5UJA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UJA entry

There is 1 chain in PDB entry 5UJA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 UNK 31GLN 1516
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 5UJA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 43Right-handed alpha
Helix 2
AA2
A
45 53Right-handed alpha
Helix 3
AA3
A
76 99Right-handed alpha
Helix 4
AA4
A
105 131Right-handed alpha
Helix 5
AA5
A
137 149Right-handed alpha
Helix 6
AA6
A
151 157Right-handed alpha
Helix 7
AA7
A
172 194Right-handed alpha
Helix 8
AA8
A
208 213Right-handed alpha
Helix 9
AA9
A
214 221Right-handed alpha
Helix 10
AB1
A
224 234Right-handed alpha
Helix 11
AB2
A
249 268Right-handed alpha
Helix 12
AB3
A
315 319Right-handed alpha
Helix 13
AB4
A
321 326Right-handed alpha
Helix 14
AB5
A
326 355Right-handed alpha
Helix 15
AB6
A
359 408Right-handed alpha
Helix 16
AB7
A
411 441Right-handed alpha
Helix 17
AB8
A
442 463Right-handed alpha
Helix 18
AB9
A
466 511Right-handed alpha
Helix 19
AC1
A
511 518Right-handed alpha
Helix 20
AC2
A
520 572Right-handed alpha
Helix 21
AC3
A
578 621Right-handed alpha
Helix 22
AC4
A
626 630Right-handed 310
Helix 23
AC5
A
683 692Right-handed alpha
Helix 24
AC6
A
721 728Right-handed alpha
Helix 25
AC7
A
733 744Right-handed alpha
Helix 26
AC8
A
746 752Right-handed alpha
Helix 27
AC9
A
769 784Right-handed alpha
Helix 28
AD1
A
799 810Right-handed alpha
Helix 29
AD2
A
851 857Right-handed alpha
Helix 30
AD3
A
860 866Right-handed alpha
Helix 31
AD4
A
958 970Right-handed alpha
Helix 32
AD5
A
970 999Right-handed alpha
Helix 33
AD6
A
1010 1058Right-handed alpha
Helix 34
AD7
A
1059 1066Right-handed alpha
Helix 35
AD8
A
1067 1111Right-handed alpha
Helix 36
AD9
A
1112 1116Right-handed 310
Helix 37
AE1
A
1117 1160Right-handed alpha
Helix 38
AE2
A
1160 1168Right-handed alpha
Helix 39
AE3
A
1169 1220Right-handed alpha
Helix 40
AE4
A
1226 1257Right-handed alpha
Helix 41
AE5
A
1257 1265Right-handed alpha
Helix 42
AE6
A
1331 1338Right-handed alpha
Helix 43
AE7
A
1361 1369Right-handed alpha
Helix 44
AE8
A
1383 1388Right-handed alpha
Helix 45
AE9
A
1394 1405Right-handed alpha
Helix 46
AF1
A
1407 1414Right-handed alpha
Helix 47
AF2
A
1416 1419Right-handed 310
Helix 48
AF3
A
1430 1446Right-handed alpha
Helix 49
AF4
A
1461 1475Right-handed alpha
Helix 50
AF5
A
1486 1491Right-handed alpha
Helix 51
AF6
A
1509 1516Right-handed alpha
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There are 6 sheets in PDB entry 5UJA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
662 667first strand
Strand 2
A
644 652anti-parallel
Strand 3
A
696 704anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
708 711first strand
Strand 2
A
788 792parallel
Strand 3
A
821 825parallel
Strand 4
A
673 677parallel
Strand 5
A
837 841parallel
Strand 6
A
846 850anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1315 1316first strand
Strand 2
A
1292 1298anti-parallel
Strand 3
A
1347 1352anti-parallel
Strand 4
A
1355 1356anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1480 1483first strand
Strand 2
A
1321 1325parallel
Strand 3
A
1495 1499parallel
Strand 4
A
1504 1507anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1370 1371first strand
Strand 2
A
1450 1451parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1381 1382first strand
Strand 2
A
1421 1422anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il