Analysis of interatomic Contacts of Structural Units in PDB entry:
5UJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UJD entry

There are 2 chains in PDB entry 5UJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 254
B
 MET 1GLU 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5UJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 6Right-handed alpha
Helix 2
AA2
A
23 38Right-handed alpha
Helix 3
AA3
A
59 69Right-handed alpha
Helix 4
AA4
A
80 82Right-handed 310
Helix 5
AA5
A
95 98Right-handed 310
Helix 6
AA6
A
99 104Right-handed alpha
Helix 7
AA7
A
140 153Right-handed alpha
Helix 8
AA8
A
182 192Right-handed alpha
Helix 9
AA9
A
217 220Right-handed 310
Helix 10
AB1
A
223 239Right-handed alpha
Helix 11
AB2
B
2 7Right-handed alpha
Helix 12
AB3
B
23 38Right-handed alpha
Helix 13
AB4
B
59 69Right-handed alpha
Helix 14
AB5
B
80 82Right-handed 310
Helix 15
AB6
B
95 98Right-handed 310
Helix 16
AB7
B
99 104Right-handed alpha
Helix 17
AB8
B
133 137Right-handed 310
Helix 18
AB9
B
140 153Right-handed alpha
Helix 19
AC1
B
182 192Right-handed alpha
Helix 20
AC2
B
217 219Right-handed 310
Helix 21
AC3
B
223 239Right-handed alpha
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There are 10 sheets in PDB entry 5UJD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
73 78anti-parallel
Strand 3
A
44 48parallel
Strand 4
A
54 58anti-parallel
Strand 5
A
16 17parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
214 215anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 132first strand
Strand 2
A
121 124anti-parallel
Strand 3
A
174 178anti-parallel
Strand 4
A
84 93anti-parallel
Strand 5
A
159 162anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 132first strand
Strand 2
A
121 124anti-parallel
Strand 3
A
174 178anti-parallel
Strand 4
A
84 93anti-parallel
Strand 5
A
201 205anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 210first strand
Strand 2
B
248 251parallel
Strand 3
A
241 244anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 210first strand
Strand 2
A
248 251parallel
Strand 3
B
241 244anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
73 78anti-parallel
Strand 3
B
44 48parallel
Strand 4
B
54 58anti-parallel
Strand 5
B
16 17parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 40first strand
Strand 2
B
214 215anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 132first strand
Strand 2
B
121 124anti-parallel
Strand 3
B
174 178anti-parallel
Strand 4
B
84 93anti-parallel
Strand 5
B
159 162anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 132first strand
Strand 2
B
121 124anti-parallel
Strand 3
B
174 178anti-parallel
Strand 4
B
84 93anti-parallel
Strand 5
B
201 205anti-parallel
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