Analysis of interatomic Contacts of Structural Units in PDB entry:
5UJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UJI entry

There are 2 chains in PDB entry 5UJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 97ASP 469
B
 GLY 97PHE 470
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 5UJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
99 109Right-handed alpha
Helix 2
AA2
A
113 125Right-handed alpha
Helix 3
AA3
A
139 152Right-handed alpha
Helix 4
AA4
A
170 173Right-handed 310
Helix 5
AA5
A
174 188Right-handed alpha
Helix 6
AA6
A
196 204Right-handed alpha
Helix 7
AA7
A
207 224Right-handed alpha
Helix 8
AA8
A
237 241Right-handed alpha
Helix 9
AA9
A
246 257Right-handed alpha
Helix 10
AB1
A
259 268Right-handed alpha
Helix 11
AB2
A
274 279Right-handed alpha
Helix 12
AB3
A
279 286Right-handed alpha
Helix 13
AB4
A
287 292Right-handed 310
Helix 14
AB5
A
293 298Right-handed alpha
Helix 15
AB6
A
314 324Right-handed alpha
Helix 16
AB7
A
325 328Right-handed 310
Helix 17
AB8
A
364 376Right-handed alpha
Helix 18
AB9
A
397 407Right-handed alpha
Helix 19
AC1
A
411 419Right-handed alpha
Helix 20
AC2
A
425 451Right-handed alpha
Helix 21
AC3
A
453 461Right-handed alpha
Helix 22
AC4
B
99 110Right-handed alpha
Helix 23
AC5
B
113 124Right-handed alpha
Helix 24
AC6
B
139 152Right-handed alpha
Helix 25
AC7
B
170 188Right-handed alpha
Helix 26
AC8
B
196 204Right-handed alpha
Helix 27
AC9
B
207 224Right-handed alpha
Helix 28
AD1
B
228 230Right-handed 310
Helix 29
AD2
B
237 241Right-handed alpha
Helix 30
AD3
B
242 244Right-handed 310
Helix 31
AD4
B
246 257Right-handed alpha
Helix 32
AD5
B
259 268Right-handed alpha
Helix 33
AD6
B
274 280Right-handed alpha
Helix 34
AD7
B
280 286Right-handed alpha
Helix 35
AD8
B
287 292Right-handed 310
Helix 36
AD9
B
293 298Right-handed alpha
Helix 37
AE1
B
314 327Right-handed alpha
Helix 38
AE2
B
338 348Right-handed alpha
Helix 39
AE3
B
364 376Right-handed alpha
Helix 40
AE4
B
397 407Right-handed alpha
Helix 41
AE5
B
411 420Right-handed alpha
Helix 42
AE6
B
424 451Right-handed alpha
Helix 43
AE7
B
453 462Right-handed alpha
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There are 2 sheets in PDB entry 5UJI. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 236first strand
Strand 2
A
191 195parallel
Strand 3
A
156 162parallel
Strand 4
A
304 309parallel
Strand 5
A
333 336parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 236first strand
Strand 2
B
191 195parallel
Strand 3
B
156 162parallel
Strand 4
B
304 307parallel
Strand 5
B
333 334parallel
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