Analysis of interatomic Contacts of Structural Units in PDB entry:
5UJJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UJJ entry

There are 2 chains in PDB entry 5UJJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8PHE 470
B
 ASP 83PHE 470
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 5UJJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 29Right-handed alpha
Helix 2
AA2
A
32 55Right-handed alpha
Helix 3
AA3
A
99 108Right-handed alpha
Helix 4
AA4
A
113 125Right-handed alpha
Helix 5
AA5
A
129 134Right-handed alpha
Helix 6
AA6
A
142 152Right-handed alpha
Helix 7
AA7
A
170 172Right-handed 310
Helix 8
AA8
A
173 188Right-handed alpha
Helix 9
AA9
A
196 204Right-handed alpha
Helix 10
AB1
A
207 224Right-handed alpha
Helix 11
AB2
A
237 242Right-handed alpha
Helix 12
AB3
A
246 257Right-handed alpha
Helix 13
AB4
A
259 268Right-handed alpha
Helix 14
AB5
A
274 280Right-handed alpha
Helix 15
AB6
A
280 286Right-handed alpha
Helix 16
AB7
A
287 292Right-handed 310
Helix 17
AB8
A
293 298Right-handed alpha
Helix 18
AB9
A
313 324Right-handed alpha
Helix 19
AC1
A
325 328Right-handed 310
Helix 20
AC2
A
364 376Right-handed alpha
Helix 21
AC3
A
383 391Right-handed alpha
Helix 22
AC4
A
397 407Right-handed alpha
Helix 23
AC5
A
409 423Right-handed alpha
Helix 24
AC6
A
426 452Right-handed alpha
Helix 25
AC7
A
453 462Right-handed alpha
Helix 26
AC8
B
99 108Right-handed alpha
Helix 27
AC9
B
113 125Right-handed alpha
Helix 28
AD1
B
129 134Right-handed alpha
Helix 29
AD2
B
142 152Right-handed alpha
Helix 30
AD3
B
173 188Right-handed alpha
Helix 31
AD4
B
196 204Right-handed alpha
Helix 32
AD5
B
207 224Right-handed alpha
Helix 33
AD6
B
237 241Right-handed alpha
Helix 34
AD7
B
242 244Right-handed 310
Helix 35
AD8
B
246 257Right-handed alpha
Helix 36
AD9
B
259 268Right-handed alpha
Helix 37
AE1
B
274 286Right-handed alpha
Helix 38
AE2
B
287 292Right-handed 310
Helix 39
AE3
B
293 298Right-handed alpha
Helix 40
AE4
B
313 327Right-handed alpha
Helix 41
AE5
B
354 358Right-handed 310
Helix 42
AE6
B
364 375Right-handed alpha
Helix 43
AE7
B
383 391Right-handed alpha
Helix 44
AE8
B
397 407Right-handed alpha
Helix 45
AE9
B
409 423Right-handed alpha
Helix 46
AF1
B
426 451Right-handed alpha
Helix 47
AF2
B
453 461Right-handed alpha
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There are 6 sheets in PDB entry 5UJJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
90 91anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
137 141anti-parallel
Strand 3
A
333 337anti-parallel
Strand 4
A
304 310parallel
Strand 5
A
156 162parallel
Strand 6
A
191 195parallel
Strand 7
A
232 236parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 342first strand
Strand 2
A
345 349anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 86first strand
Strand 2
B
89 91anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 111first strand
Strand 2
B
137 141anti-parallel
Strand 3
B
333 337anti-parallel
Strand 4
B
304 310parallel
Strand 5
B
156 162parallel
Strand 6
B
191 195parallel
Strand 7
B
232 236parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
341 342first strand
Strand 2
B
345 349anti-parallel
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