Analysis of interatomic Contacts of Structural Units in PDB entry:
5UJS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UJS entry

There are 2 chains in PDB entry 5UJS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN -1	GLU 418
B	ASP -12	GLU 418

There are 36 helices in PDB entry 5UJS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	31	Right-handed alpha
Helix 2	AA2	A	32	35	Right-handed 310
Helix 3	AA3	A	47	60	Right-handed alpha
Helix 4	AA4	A	85	91	Right-handed alpha
Helix 5	AA5	A	92	96	Right-handed 310
Helix 6	AA6	A	97	106	Right-handed alpha
Helix 7	AA7	A	124	133	Right-handed alpha
Helix 8	AA8	A	161	175	Right-handed alpha
Helix 9	AA9	A	187	200	Right-handed alpha
Helix 10	AB1	A	232	246	Right-handed alpha
Helix 11	AB2	A	256	259	Right-handed 310
Helix 12	AB3	A	260	270	Right-handed alpha
Helix 13	AB4	A	303	305	Right-handed 310
Helix 14	AB5	A	306	315	Right-handed alpha
Helix 15	AB6	A	334	340	Right-handed alpha
Helix 16	AB7	A	369	383	Right-handed alpha
Helix 17	AB8	A	392	397	Right-handed alpha
Helix 18	AB9	A	401	409	Right-handed alpha
Helix 19	AC1	B	-7	-3	Right-handed 310
Helix 20	AC2	B	21	31	Right-handed alpha
Helix 21	AC3	B	32	35	Right-handed 310
Helix 22	AC4	B	47	60	Right-handed alpha
Helix 23	AC5	B	86	93	Right-handed alpha
Helix 24	AC6	B	93	106	Right-handed alpha
Helix 25	AC7	B	126	133	Right-handed alpha
Helix 26	AC8	B	161	175	Right-handed alpha
Helix 27	AC9	B	187	200	Right-handed alpha
Helix 28	AD1	B	232	246	Right-handed alpha
Helix 29	AD2	B	256	259	Right-handed 310
Helix 30	AD3	B	260	270	Right-handed alpha
Helix 31	AD4	B	303	305	Right-handed 310
Helix 32	AD5	B	306	315	Right-handed alpha
Helix 33	AD6	B	334	340	Right-handed alpha
Helix 34	AD7	B	369	383	Right-handed alpha
Helix 35	AD8	B	392	397	Right-handed alpha
Helix 36	AD9	B	401	409	Right-handed alpha

There are 12 sheets in PDB entry 5UJS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	366	first strand
Strand 2	A	386	390	parallel
Strand 3	A	2	7	anti-parallel
Strand 4	A	413	417	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	250	253	parallel
Strand 3	A	280	284	anti-parallel
Strand 4	A	273	277	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	67	first strand
Strand 2	A	70	74	anti-parallel
Strand 3	A	39	42	anti-parallel
Strand 4	A	227	228	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	107	111	parallel
Strand 3	A	143	147	anti-parallel
Strand 4	A	136	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	156	first strand
Strand 2	A	176	182	parallel
Strand 3	A	211	217	anti-parallel
Strand 4	A	203	205	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	295	first strand
Strand 2	A	320	324	parallel
Strand 3	A	351	355	anti-parallel
Strand 4	A	345	348	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	366	first strand
Strand 2	B	386	390	parallel
Strand 3	B	2	7	anti-parallel
Strand 4	B	413	417	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	17	first strand
Strand 2	B	250	253	parallel
Strand 3	B	280	284	anti-parallel
Strand 4	B	273	277	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	67	first strand
Strand 2	B	70	74	anti-parallel
Strand 3	B	39	42	anti-parallel
Strand 4	B	227	228	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	111	first strand
Strand 2	B	143	147	anti-parallel
Strand 3	B	136	139	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	156	first strand
Strand 2	B	176	182	parallel
Strand 3	B	211	217	anti-parallel
Strand 4	B	203	205	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	295	first strand
Strand 2	B	320	324	parallel
Strand 3	B	351	355	anti-parallel
Strand 4	B	345	348	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UJS

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UJS