Analysis of interatomic Contacts of Structural Units in PDB entry:
5UJU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UJU entry

There are 2 chains in PDB entry 5UJU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 558
B
 MET 1PRO 557
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 5UJU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 9Right-handed alpha
Helix 2
AA2
A
9 23Right-handed alpha
Helix 3
AA3
A
34 39Right-handed alpha
Helix 4
AA4
A
41 53Right-handed alpha
Helix 5
AA5
A
88 125Right-handed alpha
Helix 6
AA6
A
125 138Right-handed alpha
Helix 7
AA7
A
140 149Right-handed alpha
Helix 8
AA8
A
149 168Right-handed alpha
Helix 9
AA9
A
208 223Right-handed alpha
Helix 10
AB1
A
236 253Right-handed alpha
Helix 11
AB2
A
256 258Right-handed 310
Helix 12
AB3
A
269 278Right-handed alpha
Helix 13
AB4
A
290 301Right-handed alpha
Helix 14
AB5
A
323 337Right-handed alpha
Helix 15
AB6
A
338 341Right-handed 310
Helix 16
AB7
A
364 381Right-handed alpha
Helix 17
AB8
A
382 391Right-handed alpha
Helix 18
AB9
A
395 407Right-handed alpha
Helix 19
AC1
A
440 445Right-handed alpha
Helix 20
AC2
A
460 476Right-handed alpha
Helix 21
AC3
A
486 501Right-handed alpha
Helix 22
AC4
A
538 543Right-handed alpha
Helix 23
AC5
B
3 9Right-handed alpha
Helix 24
AC6
B
9 23Right-handed alpha
Helix 25
AC7
B
34 39Right-handed alpha
Helix 26
AC8
B
41 53Right-handed alpha
Helix 27
AC9
B
88 107Right-handed alpha
Helix 28
AD1
B
107 125Right-handed alpha
Helix 29
AD2
B
125 138Right-handed alpha
Helix 30
AD3
B
140 149Right-handed alpha
Helix 31
AD4
B
149 168Right-handed alpha
Helix 32
AD5
B
208 223Right-handed alpha
Helix 33
AD6
B
236 253Right-handed alpha
Helix 34
AD7
B
256 258Right-handed 310
Helix 35
AD8
B
269 278Right-handed alpha
Helix 36
AD9
B
290 301Right-handed alpha
Helix 37
AE1
B
323 337Right-handed alpha
Helix 38
AE2
B
338 341Right-handed 310
Helix 39
AE3
B
364 381Right-handed alpha
Helix 40
AE4
B
382 391Right-handed alpha
Helix 41
AE5
B
396 407Right-handed alpha
Helix 42
AE6
B
440 445Right-handed alpha
Helix 43
AE7
B
460 476Right-handed alpha
Helix 44
AE8
B
486 501Right-handed alpha
Helix 45
AE9
B
538 543Right-handed alpha
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There are 8 sheets in PDB entry 5UJU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 69first strand
Strand 2
A
84 85anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 180first strand
Strand 2
A
183 196anti-parallel
Strand 3
A
546 554anti-parallel
Strand 4
B
503 506parallel
Strand 5
B
479 483parallel
Strand 6
B
315 318parallel
Strand 7
B
348 352parallel
Strand 8
B
452 458parallel
Strand 9
B
432 437parallel
Strand 10
B
410 413anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 262first strand
Strand 2
A
226 230parallel
Strand 3
A
199 203parallel
Strand 4
A
282 288parallel
Strand 5
A
305 309parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 413first strand
Strand 2
A
432 437anti-parallel
Strand 3
A
452 458parallel
Strand 4
A
348 352parallel
Strand 5
A
315 318parallel
Strand 6
A
479 483parallel
Strand 7
A
503 506parallel
Strand 8
B
546 554parallel
Strand 9
B
183 196anti-parallel
Strand 10
B
173 180anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 321first strand
Strand 2
A
356 358parallel
Strand 3
A
361 363anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 69first strand
Strand 2
B
84 85anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 262first strand
Strand 2
B
226 230parallel
Strand 3
B
199 203parallel
Strand 4
B
282 288parallel
Strand 5
B
305 309parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
356 358first strand
Strand 2
B
361 363anti-parallel
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