Analysis of interatomic Contacts of Structural Units in PDB entry:
5UJW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UJW entry

There are 6 chains in PDB entry 5UJW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2GLU 253
B
 MSE 1LYS 249
C
 GLN 2GLU 253
D
 GLN 2GLU 253
E
 GLN 2GLU 253
F
 GLN 2LEU 99
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 81 helices in PDB entry 5UJW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 26Right-handed alpha
Helix 2
AA2
A
42 44Right-handed 310
Helix 3
AA3
A
45 52Right-handed alpha
Helix 4
AA4
A
77 84Right-handed alpha
Helix 5
AA5
A
93 99Right-handed alpha
Helix 6
AA6
A
103 115Right-handed alpha
Helix 7
AA7
A
128 134Right-handed alpha
Helix 8
AA8
A
136 144Right-handed alpha
Helix 9
AA9
A
145 152Right-handed alpha
Helix 10
AB1
A
153 160Right-handed alpha
Helix 11
AB2
A
177 194Right-handed alpha
Helix 12
AB3
A
196 201Right-handed alpha
Helix 13
AB4
A
231 235Right-handed 310
Helix 14
AB5
A
236 253Right-handed alpha
Helix 15
AB6
B
14 23Right-handed alpha
Helix 16
AB7
B
42 44Right-handed 310
Helix 17
AB8
B
45 53Right-handed alpha
Helix 18
AB9
B
77 84Right-handed alpha
Helix 19
AC1
B
93 100Right-handed alpha
Helix 20
AC2
B
103 115Right-handed alpha
Helix 21
AC3
B
128 134Right-handed alpha
Helix 22
AC4
B
136 152Right-handed alpha
Helix 23
AC5
B
153 158Right-handed alpha
Helix 24
AC6
B
178 196Right-handed alpha
Helix 25
AC7
B
198 203Right-handed alpha
Helix 26
AC8
B
212 214Right-handed 310
Helix 27
AC9
B
215 221Right-handed alpha
Helix 28
AD1
B
231 236Right-handed alpha
Helix 29
AD2
B
236 246Right-handed alpha
Helix 30
AD3
C
14 26Right-handed alpha
Helix 31
AD4
C
45 51Right-handed alpha
Helix 32
AD5
C
77 84Right-handed alpha
Helix 33
AD6
C
93 99Right-handed alpha
Helix 34
AD7
C
103 116Right-handed alpha
Helix 35
AD8
C
128 134Right-handed alpha
Helix 36
AD9
C
136 145Right-handed alpha
Helix 37
AE1
C
147 151Right-handed 310
Helix 38
AE2
C
153 158Right-handed alpha
Helix 39
AE3
C
166 170Right-handed 310
Helix 40
AE4
C
177 196Right-handed alpha
Helix 41
AE5
C
215 220Right-handed alpha
Helix 42
AE6
C
232 235Right-handed 310
Helix 43
AE7
C
236 252Right-handed alpha
Helix 44
AE8
D
14 21Right-handed alpha
Helix 45
AE9
D
21 27Right-handed alpha
Helix 46
AF1
D
45 53Right-handed alpha
Helix 47
AF2
D
77 85Right-handed alpha
Helix 48
AF3
D
93 98Right-handed alpha
Helix 49
AF4
D
103 115Right-handed alpha
Helix 50
AF5
D
128 133Right-handed alpha
Helix 51
AF6
D
136 152Right-handed alpha
Helix 52
AF7
D
153 158Right-handed alpha
Helix 53
AF8
D
177 194Right-handed alpha
Helix 54
AF9
D
196 203Right-handed alpha
Helix 55
AG1
D
215 221Right-handed alpha
Helix 56
AG2
D
236 251Right-handed alpha
Helix 57
AG3
E
14 23Right-handed alpha
Helix 58
AG4
E
24 26Right-handed 310
Helix 59
AG5
E
46 51Right-handed alpha
Helix 60
AG6
E
77 84Right-handed alpha
Helix 61
AG7
E
93 100Right-handed alpha
Helix 62
AG8
E
103 112Right-handed alpha
Helix 63
AG9
E
128 134Right-handed alpha
Helix 64
AH1
E
136 147Right-handed alpha
Helix 65
AH2
E
153 158Right-handed alpha
Helix 66
AH3
E
177 193Right-handed alpha
Helix 67
AH4
E
212 221Right-handed alpha
Helix 68
AH5
E
232 235Right-handed 310
Helix 69
AH6
E
236 249Right-handed alpha
Helix 70
AH7
F
18 22Right-handed 310
Helix 71
AH8
F
45 50Right-handed alpha
Helix 72
AH9
F
77 85Right-handed alpha
Helix 73
AI1
F
93 98Right-handed alpha
Helix 74
AI2
F
103 113Right-handed alpha
Helix 75
AI3
F
128 134Right-handed alpha
Helix 76
AI4
F
139 144Right-handed alpha
Helix 77
AI5
F
153 158Right-handed alpha
Helix 78
AI6
F
177 192Right-handed alpha
Helix 79
AI7
F
197 202Right-handed alpha
Helix 80
AI8
F
213 220Right-handed alpha
Helix 81
AI9
F
236 249Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 5UJW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 8first strand
Strand 2
A
35 40parallel
Strand 3
A
58 61parallel
Strand 4
A
88 91parallel
Strand 5
A
120 125parallel
Strand 6
A
161 164parallel
Strand 7
A
205 207parallel
Strand 8
A
227 230parallel
Strand 9
A
3 8parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 8first strand
Strand 2
B
37 40parallel
Strand 3
B
57 61parallel
Strand 4
B
88 91parallel
Strand 5
B
120 125parallel
Strand 6
B
161 164parallel
Strand 7
B
205 207parallel
Strand 8
B
227 230parallel
Strand 9
B
4 8parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 40first strand
Strand 2
C
3 8parallel
Strand 3
C
228 230parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 61first strand
Strand 2
C
88 91parallel
Strand 3
C
120 125parallel
Strand 4
C
161 164parallel
Strand 5
C
204 207parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 8first strand
Strand 2
D
36 40parallel
Strand 3
D
58 61parallel
Strand 4
D
88 91parallel
Strand 5
D
120 125parallel
Strand 6
D
161 164parallel
Strand 7
D
204 207parallel
Strand 8
D
227 230parallel
Strand 9
D
4 8parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 7first strand
Strand 2
E
36 39parallel
Strand 3
E
58 61parallel
Strand 4
E
88 91parallel
Strand 5
E
122 125parallel
Strand 6
E
161 164parallel
Strand 7
E
205 207parallel
Strand 8
E
227 230parallel
Strand 9
E
4 7parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
58 59first strand
Strand 2
F
35 39parallel
Strand 3
F
3 7parallel
Strand 4
F
228 230parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
89 91first strand
Strand 2
F
121 126parallel
Strand 3
F
161 165parallel
Strand 4
F
204 207parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il