Analysis of interatomic Contacts of Structural Units in PDB entry:
5UJY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UJY entry

There are 2 chains in PDB entry 5UJY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 18PHE 702
B
 ARG 18LYS 626
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 5UJY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 37Right-handed alpha
Helix 2
AA2
A
55 59Right-handed 310
Helix 3
AA3
A
60 64Right-handed 310
Helix 4
AA4
A
89 100Right-handed alpha
Helix 5
AA5
A
113 128Right-handed alpha
Helix 6
AA6
A
142 152Right-handed alpha
Helix 7
AA7
A
157 186Right-handed alpha
Helix 8
AA8
A
193 213Right-handed alpha
Helix 9
AA9
A
253 257Right-handed 310
Helix 10
AB1
A
273 285Right-handed alpha
Helix 11
AB2
A
308 321Right-handed alpha
Helix 12
AB3
A
323 337Right-handed alpha
Helix 13
AB4
A
351 367Right-handed alpha
Helix 14
AB5
A
401 409Right-handed alpha
Helix 15
AB6
A
415 430Right-handed alpha
Helix 16
AB7
A
465 470Right-handed 310
Helix 17
AB8
A
518 529Right-handed alpha
Helix 18
AB9
A
536 547Right-handed alpha
Helix 19
AC1
A
560 574Right-handed alpha
Helix 20
AC2
A
575 578Right-handed 310
Helix 21
AC3
A
579 595Right-handed alpha
Helix 22
AC4
A
599 610Right-handed alpha
Helix 23
AC5
A
619 623Right-handed 310
Helix 24
AC6
A
624 635Right-handed alpha
Helix 25
AC7
A
639 641Right-handed 310
Helix 26
AC8
A
694 702Right-handed alpha
Helix 27
AC9
B
25 37Right-handed alpha
Helix 28
AD1
B
55 59Right-handed 310
Helix 29
AD2
B
60 64Right-handed 310
Helix 30
AD3
B
74 78Right-handed 310
Helix 31
AD4
B
89 100Right-handed alpha
Helix 32
AD5
B
113 128Right-handed alpha
Helix 33
AD6
B
142 152Right-handed alpha
Helix 34
AD7
B
157 186Right-handed alpha
Helix 35
AD8
B
193 213Right-handed alpha
Helix 36
AD9
B
253 257Right-handed 310
Helix 37
AE1
B
273 283Right-handed alpha
Helix 38
AE2
B
308 319Right-handed alpha
Helix 39
AE3
B
323 337Right-handed alpha
Helix 40
AE4
B
351 367Right-handed alpha
Helix 41
AE5
B
401 409Right-handed alpha
Helix 42
AE6
B
415 431Right-handed alpha
Helix 43
AE7
B
465 470Right-handed 310
Helix 44
AE8
B
518 529Right-handed alpha
Helix 45
AE9
B
536 547Right-handed alpha
Helix 46
AF1
B
560 574Right-handed alpha
Helix 47
AF2
B
575 578Right-handed 310
Helix 48
AF3
B
579 595Right-handed alpha
Helix 49
AF4
B
599 610Right-handed alpha
Helix 50
AF5
B
619 622Right-handed 310
Helix 51
AF6
B
623 635Right-handed alpha
Helix 52
AF7
B
689 693Right-handed 310
Helix 53
AF8
B
694 704Right-handed alpha
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There are 10 sheets in PDB entry 5UJY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
19 23parallel
Strand 3
A
105 108parallel
Strand 4
A
133 135parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
84 85anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 270first strand
Strand 2
A
249 251parallel
Strand 3
A
238 246anti-parallel
Strand 4
A
451 460anti-parallel
Strand 5
A
435 448anti-parallel
Strand 6
A
289 301anti-parallel
Strand 7
A
498 510anti-parallel
Strand 8
A
217 226anti-parallel
Strand 9
A
238 246anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 553first strand
Strand 2
A
556 559anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
643 648first strand
Strand 2
A
654 660anti-parallel
Strand 3
A
663 670anti-parallel
Strand 4
A
678 683anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 44first strand
Strand 2
B
19 23parallel
Strand 3
B
105 108parallel
Strand 4
B
133 135parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 51first strand
Strand 2
B
84 85anti-parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 270first strand
Strand 2
B
249 251parallel
Strand 3
B
238 246anti-parallel
Strand 4
B
451 460anti-parallel
Strand 5
B
435 448anti-parallel
Strand 6
B
289 301anti-parallel
Strand 7
B
498 510anti-parallel
Strand 8
B
217 226anti-parallel
Strand 9
B
238 246anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
550 553first strand
Strand 2
B
556 559anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
644 648first strand
Strand 2
B
654 660anti-parallel
Strand 3
B
663 670anti-parallel
Strand 4
B
678 683anti-parallel
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