Analysis of interatomic Contacts of Structural Units in PDB entry:
5UK1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UK1 entry

There are 9 chains in PDB entry 5UK1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 4	SER 326
B	GLY 501	ILE 673
C	GLU 4	SER 326
D	GLY 501	ILE 673
E	GLU 4	SER 326
F	GLY 501	ILE 673
G	GLU 1	SER 252
H	GLU 1	SER 252
I	GLU 1	SER 252

There are 30 helices in PDB entry 5UK1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	67	Right-handed alpha
Helix 2	AA2	A	101	109	Right-handed alpha
Helix 3	AA3	A	122	127	Right-handed alpha
Helix 4	AA4	A	187	195	Right-handed alpha
Helix 5	AA5	B	537	557	Right-handed alpha
Helix 6	AA6	B	574	626	Right-handed alpha
Helix 7	AA7	B	645	654	Right-handed alpha
Helix 8	AA8	B	662	670	Right-handed alpha
Helix 9	AA9	C	60	67	Right-handed alpha
Helix 10	AB1	C	101	109	Right-handed alpha
Helix 11	AB2	C	122	127	Right-handed alpha
Helix 12	AB3	C	187	195	Right-handed alpha
Helix 13	AB4	D	537	557	Right-handed alpha
Helix 14	AB5	D	574	626	Right-handed alpha
Helix 15	AB6	D	645	654	Right-handed alpha
Helix 16	AB7	D	662	670	Right-handed alpha
Helix 17	AB8	E	60	67	Right-handed alpha
Helix 18	AB9	E	101	109	Right-handed alpha
Helix 19	AC1	E	122	127	Right-handed alpha
Helix 20	AC2	E	187	195	Right-handed alpha
Helix 21	AC3	F	537	557	Right-handed alpha
Helix 22	AC4	F	574	626	Right-handed alpha
Helix 23	AC5	F	645	654	Right-handed alpha
Helix 24	AC6	F	662	670	Right-handed alpha
Helix 25	AC7	G	80	84	Right-handed 310
Helix 26	AC8	G	211	215	Right-handed 310
Helix 27	AC9	H	80	84	Right-handed 310
Helix 28	AD1	H	211	215	Right-handed 310
Helix 29	AD2	I	80	84	Right-handed 310
Helix 30	AD3	I	211	215	Right-handed 310

There are 48 sheets in PDB entry 5UK1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	531	536	first strand
Strand 2	B	522	528	anti-parallel
Strand 3	A	6	11	anti-parallel
Strand 4	B	637	640	anti-parallel
Strand 5	B	630	633	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	22	first strand
Strand 2	A	25	26	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	35	first strand
Strand 2	A	316	318	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	A	279	280	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	83	85	parallel
Strand 3	A	268	270	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	155	156	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	140	first strand
Strand 2	A	145	146	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	153	first strand
Strand 2	A	251	254	anti-parallel
Strand 3	A	175	184	anti-parallel
Strand 4	A	229	237	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	153	first strand
Strand 2	A	251	254	anti-parallel
Strand 3	A	175	184	anti-parallel
Strand 4	A	258	260	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	169	first strand
Strand 2	A	242	247	anti-parallel
Strand 3	A	202	205	anti-parallel
Strand 4	A	210	213	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	289	first strand
Strand 2	A	282	284	anti-parallel
Strand 3	A	303	305	anti-parallel
Strand 4	B	563	565	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	531	536	first strand
Strand 2	D	522	528	anti-parallel
Strand 3	C	6	11	anti-parallel
Strand 4	D	637	640	anti-parallel
Strand 5	D	630	633	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	22	first strand
Strand 2	C	25	26	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	35	first strand
Strand 2	C	316	318	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	48	first strand
Strand 2	C	279	280	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	83	85	parallel
Strand 3	C	268	270	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	131	first strand
Strand 2	C	155	156	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	140	first strand
Strand 2	C	145	146	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	153	first strand
Strand 2	C	251	254	anti-parallel
Strand 3	C	175	184	anti-parallel
Strand 4	C	229	237	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	153	first strand
Strand 2	C	251	254	anti-parallel
Strand 3	C	175	184	anti-parallel
Strand 4	C	258	260	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	169	first strand
Strand 2	C	242	247	anti-parallel
Strand 3	C	202	205	anti-parallel
Strand 4	C	210	213	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	287	289	first strand
Strand 2	C	282	284	anti-parallel
Strand 3	C	303	305	anti-parallel
Strand 4	D	563	565	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	531	536	first strand
Strand 2	F	522	528	anti-parallel
Strand 3	E	6	11	anti-parallel
Strand 4	F	637	640	anti-parallel
Strand 5	F	630	633	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	22	first strand
Strand 2	E	25	26	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	35	first strand
Strand 2	E	316	318	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	48	first strand
Strand 2	E	279	280	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	55	first strand
Strand 2	E	83	85	parallel
Strand 3	E	268	270	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	131	first strand
Strand 2	E	155	156	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	136	140	first strand
Strand 2	E	145	146	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	153	first strand
Strand 2	E	251	254	anti-parallel
Strand 3	E	175	184	anti-parallel
Strand 4	E	229	237	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	153	first strand
Strand 2	E	251	254	anti-parallel
Strand 3	E	175	184	anti-parallel
Strand 4	E	258	260	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	164	169	first strand
Strand 2	E	242	247	anti-parallel
Strand 3	E	202	205	anti-parallel
Strand 4	E	210	213	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	287	289	first strand
Strand 2	E	282	284	anti-parallel
Strand 3	E	303	305	anti-parallel
Strand 4	F	563	565	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	5	first strand
Strand 2	G	21	25	anti-parallel
Strand 3	G	71	76	anti-parallel
Strand 4	G	63	68	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	104	108	parallel
Strand 3	G	85	92	anti-parallel
Strand 4	G	34	38	anti-parallel
Strand 5	G	46	50	anti-parallel
Strand 6	G	54	55	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	104	108	parallel
Strand 3	G	85	92	anti-parallel
Strand 4	G	98	100	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	129	132	first strand
Strand 2	G	141	149	anti-parallel
Strand 3	G	202	210	anti-parallel
Strand 4	G	192	197	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	136	137	first strand
Strand 2	G	246	250	parallel
Strand 3	G	216	222	anti-parallel
Strand 4	G	159	164	anti-parallel
Strand 5	G	170	176	anti-parallel
Strand 6	G	182	184	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	5	first strand
Strand 2	H	21	25	anti-parallel
Strand 3	H	71	76	anti-parallel
Strand 4	H	63	68	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	13	first strand
Strand 2	H	104	108	parallel
Strand 3	H	85	92	anti-parallel
Strand 4	H	34	38	anti-parallel
Strand 5	H	46	50	anti-parallel
Strand 6	H	54	55	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	13	first strand
Strand 2	H	104	108	parallel
Strand 3	H	85	92	anti-parallel
Strand 4	H	98	100	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	132	first strand
Strand 2	H	141	149	anti-parallel
Strand 3	H	202	210	anti-parallel
Strand 4	H	192	197	anti-parallel

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There are 6 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	136	137	first strand
Strand 2	H	246	250	parallel
Strand 3	H	216	222	anti-parallel
Strand 4	H	159	164	anti-parallel
Strand 5	H	170	176	anti-parallel
Strand 6	H	182	184	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	5	first strand
Strand 2	I	21	25	anti-parallel
Strand 3	I	71	76	anti-parallel
Strand 4	I	63	68	anti-parallel

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There are 6 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	104	108	parallel
Strand 3	I	85	92	anti-parallel
Strand 4	I	34	38	anti-parallel
Strand 5	I	46	50	anti-parallel
Strand 6	I	54	55	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	104	108	parallel
Strand 3	I	85	92	anti-parallel
Strand 4	I	98	100	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	129	132	first strand
Strand 2	I	141	149	anti-parallel
Strand 3	I	202	210	anti-parallel
Strand 4	I	192	197	anti-parallel

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There are 6 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	136	137	first strand
Strand 2	I	246	250	parallel
Strand 3	I	216	222	anti-parallel
Strand 4	I	159	164	anti-parallel
Strand 5	I	170	176	anti-parallel
Strand 6	I	182	184	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UK1

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UK1