Analysis of interatomic Contacts of Structural Units in PDB entry:
5UKD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UKD entry

There is 1 chain in PDB entry 5UKD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 194
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5UKD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 30Right-handed alpha
Helix 2
2
A
37 46Right-handed alpha
Helix 3
3
A
50 61Right-handed 310
Helix 4
4
A
67 79Right-handed alpha
Helix 5
5
A
95 105Right-handed alpha
Helix 6
6
A
121 133Right-handed alpha
Helix 7
7
A
142 154Right-handed alpha
Helix 8
8
A
156 166Right-handed alpha
Helix 9
9
A
178 191Right-handed alpha
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There is 1 sheet ( A) in PDB entry 5UKD.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
86 89parallel
Strand 3
A
6 13parallel
Strand 4
A
109 118parallel
Strand 5
A
169 173parallel
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