Analysis of interatomic Contacts of Structural Units in PDB entry:
5UKG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UKG entry

There are 4 chains in PDB entry 5UKG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 6PHE 184
A
 SER 188THR 411
B
 ILE 7PHE 184
B
 SER 188THR 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5UKG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 22Right-handed alpha
Helix 2
AA2
A
72 76Right-handed 310
Helix 3
AA3
A
176 184Right-handed 310
Helix 4
AA4
A
188 192Right-handed 310
Helix 5
AA5
A
202 206Right-handed 310
Helix 6
AA6
A
270 285Right-handed alpha
Helix 7
AA7
A
293 304Right-handed alpha
Helix 8
AA8
A
309 321Right-handed alpha
Helix 9
AA9
A
330 343Right-handed alpha
Helix 10
AB1
A
346 358Right-handed alpha
Helix 11
AB2
A
366 377Right-handed alpha
Helix 12
AB3
A
382 394Right-handed alpha
Helix 13
AB4
A
403 411Right-handed alpha
Helix 14
AB5
B
9 22Right-handed alpha
Helix 15
AB6
B
72 76Right-handed 310
Helix 16
AB7
B
176 184Right-handed 310
Helix 17
AB8
B
188 192Right-handed 310
Helix 18
AB9
B
200 205Right-handed alpha
Helix 19
AC1
B
270 285Right-handed alpha
Helix 20
AC2
B
293 304Right-handed alpha
Helix 21
AC3
B
309 321Right-handed alpha
Helix 22
AC4
B
330 342Right-handed alpha
Helix 23
AC5
B
346 358Right-handed alpha
Helix 24
AC6
B
366 377Right-handed alpha
Helix 25
AC7
B
382 394Right-handed alpha
Helix 26
AC8
B
403 411Right-handed alpha
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There are 6 sheets in PDB entry 5UKG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 262first strand
Strand 2
A
42 53anti-parallel
Strand 3
A
58 69anti-parallel
Strand 4
A
210 218anti-parallel
Strand 5
A
223 233anti-parallel
Strand 6
A
236 246anti-parallel
Strand 7
A
131 141parallel
Strand 8
A
144 155anti-parallel
Strand 9
A
160 169anti-parallel
Strand 10
A
99 109anti-parallel
Strand 11
A
82 93anti-parallel
Strand 12
A
32 39anti-parallel
Strand 13
A
42 53anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 292first strand
Strand 2
A
328 329anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 365first strand
Strand 2
A
401 402anti-parallel
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There are 13 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 262first strand
Strand 2
B
42 53anti-parallel
Strand 3
B
58 69anti-parallel
Strand 4
B
210 218anti-parallel
Strand 5
B
223 233anti-parallel
Strand 6
B
236 246anti-parallel
Strand 7
B
131 141parallel
Strand 8
B
144 155anti-parallel
Strand 9
B
160 169anti-parallel
Strand 10
B
99 110anti-parallel
Strand 11
B
82 93anti-parallel
Strand 12
B
32 39anti-parallel
Strand 13
B
42 53anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 292first strand
Strand 2
B
328 329anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
364 365first strand
Strand 2
B
401 402anti-parallel
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