Analysis of interatomic Contacts of Structural Units in PDB entry:
5UKH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UKH entry

There is 1 chain in PDB entry 5UKH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 212GLY 550
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 5UKH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
213 217Right-handed 310
Helix 2
AA2
A
222 237Right-handed alpha
Helix 3
AA3
A
239 257Right-handed alpha
Helix 4
AA4
A
265 280Right-handed alpha
Helix 5
AA5
A
284 292Right-handed alpha
Helix 6
AA6
A
293 297Right-handed 310
Helix 7
AA7
A
317 325Right-handed alpha
Helix 8
AA8
A
328 346Right-handed alpha
Helix 9
AA9
A
352 360Right-handed alpha
Helix 10
AB1
A
360 376Right-handed alpha
Helix 11
AB2
A
380 394Right-handed alpha
Helix 12
AB3
A
401 414Right-handed alpha
Helix 13
AB4
A
436 440Right-handed alpha
Helix 14
AB5
A
452 471Right-handed alpha
Helix 15
AB6
A
474 489Right-handed alpha
Helix 16
AB7
A
491 501Right-handed alpha
Helix 17
AB8
A
502 515Right-handed alpha
Helix 18
AB9
A
523 535Right-handed alpha
Helix 19
AC1
A
535 550Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 5UKH.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 303first strand
Strand 2
A
311 315anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il