Analysis of interatomic Contacts of Structural Units in PDB entry:
5UKI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UKI entry

There is 1 chain in PDB entry 5UKI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4ASN 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5UKI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 34Right-handed alpha
Helix 2
AA2
A
51 58Right-handed 310
Helix 3
AA3
A
61 65Right-handed 310
Helix 4
AA4
A
69 75Right-handed alpha
Helix 5
AA5
A
93 100Right-handed alpha
Helix 6
AA6
A
134 138Right-handed 310
Helix 7
AA7
A
147 153Right-handed 310
Helix 8
AA8
A
159 166Right-handed alpha
Helix 9
AA9
A
185 190Right-handed 310
Helix 10
AB1
A
191 199Right-handed alpha
Helix 11
AB2
A
200 209Right-handed 310
Helix 12
AB3
A
211 222Right-handed alpha
Helix 13
AB4
A
272 282Right-handed alpha
Helix 14
AB5
A
282 287Right-handed alpha
Helix 15
AB6
A
298 305Right-handed alpha
Helix 16
AB7
A
307 322Right-handed alpha
Helix 17
AB8
A
332 351Right-handed alpha
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There are 3 sheets in PDB entry 5UKI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
110 112anti-parallel
Strand 3
A
84 86parallel
Strand 4
A
37 44parallel
Strand 5
A
7 14parallel
Strand 6
A
256 261anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 239first strand
Strand 2
A
242 246anti-parallel
Strand 3
A
225 228parallel
Strand 4
A
176 179parallel
Strand 5
A
124 129parallel
Strand 6
A
116 121anti-parallel
Strand 7
A
270 271anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
291 292anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il