Analysis of interatomic Contacts of Structural Units in PDB entry:
5UKR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UKR entry

There are 3 chains in PDB entry 5UKR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLN 1	THR 215
L	ALA 3	PRO 208
G	THR 90	VAL 388

There are 15 helices in PDB entry 5UKR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	63	65	Right-handed 310
Helix 2	AA2	H	83	87	Right-handed 310
Helix 3	AA3	H	99	100	Right-handed alpha
Helix 4	AA4	H	156	158	Right-handed 310
Helix 5	AA5	H	187	189	Right-handed 310
Helix 6	AA6	H	201	204	Right-handed 310
Helix 7	AA7	L	79	83	Right-handed 310
Helix 8	AA8	L	121	126	Right-handed alpha
Helix 9	AA9	L	182	187	Right-handed alpha
Helix 10	AB1	G	94	97	Right-handed 310
Helix 11	AB2	G	98	112	Right-handed alpha
Helix 12	AB3	G	242	257	Right-handed alpha
Helix 13	AB4	G	275	280	Right-handed alpha
Helix 14	AB5	G	374	380	Right-handed alpha
Helix 15	AB6	G	381	383	Right-handed 310

There are 15 sheets in PDB entry 5UKR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	96	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	52	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	96	anti-parallel
Strand 4	H	100	103	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	135	145	anti-parallel
Strand 3	H	176	185	anti-parallel
Strand 4	H	163	165	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	135	145	anti-parallel
Strand 3	H	176	185	anti-parallel
Strand 4	H	169	170	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	154	first strand
Strand 2	H	195	200	anti-parallel
Strand 3	H	205	210	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	92	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	92	anti-parallel
Strand 4	L	95	98	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	24	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	62	67	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	172	181	anti-parallel
Strand 4	L	159	161	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	172	181	anti-parallel
Strand 4	L	165	166	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	154	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	191	197	anti-parallel
Strand 4	L	200	206	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	177	178	first strand
Strand 2	G	161	165	anti-parallel
Strand 3	G	385	387	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	195	197	first strand
Strand 2	G	344	356	anti-parallel
Strand 3	G	220	233	anti-parallel
Strand 4	G	364	369	first strand
Strand 5	G	265	268	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	208	209	first strand
Strand 2	G	220	233	anti-parallel
Strand 3	G	344	356	anti-parallel
Strand 4	G	237	241	first strand
Strand 5	G	312	321	anti-parallel
Strand 6	G	288	292	anti-parallel
Strand 7	G	281	285	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UKR

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UKR