Analysis of interatomic Contacts of Structural Units in PDB entry:
5UL1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UL1 entry

There are 2 chains in PDB entry 5UL1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2THR 1053
B
 SER 327LYS 567
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 5UL1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 53Right-handed alpha
Helix 2
AA2
A
58 62Right-handed 310
Helix 3
AA3
A
64 68Right-handed 310
Helix 4
AA4
A
88 92Right-handed 310
Helix 5
AA5
A
107 122Right-handed alpha
Helix 6
AA6
A
125 130Right-handed alpha
Helix 7
AA7
A
133 143Right-handed alpha
Helix 8
AA8
A
143 154Right-handed alpha
Helix 9
AA9
A
157 167Right-handed alpha
Helix 10
AB1
A
178 183Right-handed alpha
Helix 11
AB2
A
184 187Right-handed 310
Helix 12
AB3
A
216 229Right-handed alpha
Helix 13
AB4
A
239 247Right-handed alpha
Helix 14
AB5
A
266 269Right-handed 310
Helix 15
AB6
A
270 279Right-handed alpha
Helix 16
AB7
A
290 295Right-handed alpha
Helix 17
AB8
A
305 310Right-handed 310
Helix 18
AB9
A
328 330Right-handed 310
Helix 19
AC1
A
394 396Right-handed 310
Helix 20
AC2
A
488 500Right-handed alpha
Helix 21
AC3
A
525 537Right-handed alpha
Helix 22
AC4
A
544 554Right-handed alpha
Helix 23
AC5
A
556 563Right-handed 310
Helix 24
AC6
A
564 572Right-handed alpha
Helix 25
AC7
A
576 589Right-handed alpha
Helix 26
AC8
A
594 599Right-handed alpha
Helix 27
AC9
A
600 603Right-handed 310
Helix 28
AD1
A
608 623Right-handed alpha
Helix 29
AD2
A
624 631Right-handed alpha
Helix 30
AD3
A
631 638Right-handed alpha
Helix 31
AD4
A
639 641Right-handed 310
Helix 32
AD5
A
647 660Right-handed alpha
Helix 33
AD6
A
660 673Right-handed alpha
Helix 34
AD7
A
680 695Right-handed alpha
Helix 35
AD8
A
697 721Right-handed alpha
Helix 36
AD9
A
727 741Right-handed alpha
Helix 37
AE1
A
741 749Right-handed alpha
Helix 38
AE2
A
765 769Right-handed 310
Helix 39
AE3
A
789 793Right-handed 310
Helix 40
AE4
A
807 827Right-handed alpha
Helix 41
AE5
A
857 861Right-handed alpha
Helix 42
AE6
A
875 885Right-handed alpha
Helix 43
AE7
A
889 912Right-handed alpha
Helix 44
AE8
A
957 965Right-handed alpha
Helix 45
AE9
A
970 973Right-handed 310
Helix 46
AF1
A
974 994Right-handed alpha
Helix 47
AF2
A
994 1004Right-handed alpha
Helix 48
AF3
A
1015 1026Right-handed alpha
Helix 49
AF4
A
1031 1048Right-handed alpha
Helix 50
AF5
B
339 348Right-handed alpha
Helix 51
AF6
B
400 412Right-handed alpha
Helix 52
AF7
B
441 515Right-handed alpha
Helix 53
AF8
B
517 588Right-handed alpha
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There are 10 sheets in PDB entry 5UL1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 37first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
98 102parallel
Strand 4
A
69 73anti-parallel
Strand 5
A
79 82anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 212first strand
Strand 2
A
189 196anti-parallel
Strand 3
A
284 288parallel
Strand 4
A
251 254anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
484 485parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 392first strand
Strand 2
A
333 341anti-parallel
Strand 3
A
472 477anti-parallel
Strand 4
A
439 444anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
353 362anti-parallel
Strand 3
A
371 372anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
353 362anti-parallel
Strand 3
A
401 410anti-parallel
Strand 4
A
418 428anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
751 752first strand
Strand 2
A
760 761anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
770 771first strand
Strand 2
A
779 784anti-parallel
Strand 3
A
796 803anti-parallel
Strand 4
A
845 849anti-parallel
Strand 5
A
838 842anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 856first strand
Strand 2
A
921 924anti-parallel
Strand 3
A
929 931anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
389 391first strand
Strand 2
B
377 386anti-parallel
Strand 3
B
368 374anti-parallel
Strand 4
B
354 359anti-parallel
Strand 5
B
426 427parallel
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