Analysis of interatomic Contacts of Structural Units in PDB entry:
5UL3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UL3 entry

There is 1 chain in PDB entry 5UL3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6SER 736
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5UL3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 22Right-handed alpha
Helix 2
AA2
A
27 40Right-handed alpha
Helix 3
AA3
A
55 59Right-handed 310
Helix 4
AA4
A
78 81Right-handed 310
Helix 5
AA5
A
82 89Right-handed alpha
Helix 6
AA6
A
108 116Right-handed alpha
Helix 7
AA7
A
137 150Right-handed alpha
Helix 8
AA8
A
161 163Right-handed 310
Helix 9
AA9
A
165 177Right-handed alpha
Helix 10
AB1
A
189 206Right-handed alpha
Helix 11
AB2
A
217 223Right-handed alpha
Helix 12
AB3
A
223 231Right-handed alpha
Helix 13
AB4
A
241 253Right-handed alpha
Helix 14
AB5
A
257 261Right-handed 310
Helix 15
AB6
A
282 287Right-handed alpha
Helix 16
AB7
A
294 301Right-handed alpha
Helix 17
AB8
A
334 352Right-handed alpha
Helix 18
AB9
A
373 387Right-handed alpha
Helix 19
AC1
A
399 403Right-handed 310
Helix 20
AC2
A
409 427Right-handed alpha
Helix 21
AC3
A
439 446Right-handed alpha
Helix 22
AC4
A
451 465Right-handed alpha
Helix 23
AC5
A
483 494Right-handed alpha
Helix 24
AC6
A
509 520Right-handed alpha
Helix 25
AC7
A
520 528Right-handed alpha
Helix 26
AC8
A
532 537Right-handed 310
Helix 27
AC9
A
550 564Right-handed alpha
Helix 28
AD1
A
569 573Right-handed 310
Helix 29
AD2
A
587 618Right-handed alpha
Helix 30
AD3
A
619 649Right-handed alpha
Helix 31
AD4
A
651 665Right-handed alpha
Helix 32
AD5
A
682 710Right-handed alpha
Helix 33
AD6
A
719 731Right-handed alpha
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There are 6 sheets in PDB entry 5UL3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 53first strand
Strand 2
A
60 66anti-parallel
Strand 3
A
69 73anti-parallel
Strand 4
A
102 106anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 159first strand
Strand 2
A
119 124parallel
Strand 3
A
180 184parallel
Strand 4
A
212 216parallel
Strand 5
A
235 237parallel
Strand 6
A
264 267anti-parallel
Strand 7
A
273 275anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 307first strand
Strand 2
A
357 360parallel
Strand 3
A
393 395parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 311first strand
Strand 2
A
331 332anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 398first strand
Strand 2
A
432 436parallel
Strand 3
A
470 473parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
546 547first strand
Strand 2
A
580 581anti-parallel
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