Analysis of interatomic Contacts of Structural Units in PDB entry:
5ULB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ULB entry

There is 1 chain in PDB entry 5ULB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 30GLY 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5ULB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 41Right-handed alpha
Helix 2
AA2
A
57 75Right-handed alpha
Helix 3
AA3
A
86 100Right-handed alpha
Helix 4
AA4
A
114 125Right-handed alpha
Helix 5
AA5
A
149 165Right-handed alpha
Helix 6
AA6
A
179 196Right-handed alpha
Helix 7
AA7
A
211 227Right-handed alpha
Helix 8
AA8
A
239 253Right-handed alpha
Helix 9
AA9
A
266 275Right-handed alpha
Helix 10
AB1
A
287 305Right-handed alpha
Helix 11
AB2
A
321 326Right-handed alpha
Helix 12
AB3
A
333 339Right-handed 310
Helix 13
AB4
A
352 362Right-handed alpha
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There are 2 sheets in PDB entry 5ULB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 82first strand
Strand 2
A
47 52parallel
Strand 3
A
104 108parallel
Strand 4
A
128 132parallel
Strand 5
A
144 148parallel
Strand 6
A
311 314parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 205first strand
Strand 2
A
169 174parallel
Strand 3
A
234 237parallel
Strand 4
A
259 263parallel
Strand 5
A
280 285parallel
Strand 6
A
317 320anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il