Analysis of interatomic Contacts of Structural Units in PDB entry:
5ULJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ULJ entry

There are 4 chains in PDB entry 5ULJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 2	ILE 394
B	LEU -6	ILE 394
C	MET 2	ILE 394
D	MET 2	ILE 394

There are 63 helices in PDB entry 5ULJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	44	Right-handed alpha
Helix 2	AA2	A	51	55	Right-handed 310
Helix 3	AA3	A	64	68	Right-handed 310
Helix 4	AA4	A	80	94	Right-handed alpha
Helix 5	AA5	A	108	117	Right-handed alpha
Helix 6	AA6	A	118	120	Right-handed 310
Helix 7	AA7	A	141	160	Right-handed alpha
Helix 8	AA8	A	161	182	Right-handed alpha
Helix 9	AA9	A	187	191	Right-handed 310
Helix 10	AB1	A	242	245	Right-handed 310
Helix 11	AB2	A	258	280	Right-handed alpha
Helix 12	AB3	A	305	312	Right-handed alpha
Helix 13	AB4	A	325	344	Right-handed alpha
Helix 14	AB5	A	372	378	Right-handed alpha
Helix 15	AB6	A	384	394	Right-handed alpha
Helix 16	AB7	B	36	44	Right-handed alpha
Helix 17	AB8	B	51	55	Right-handed 310
Helix 18	AB9	B	64	68	Right-handed 310
Helix 19	AC1	B	72	76	Right-handed 310
Helix 20	AC2	B	80	94	Right-handed alpha
Helix 21	AC3	B	108	116	Right-handed alpha
Helix 22	AC4	B	117	120	Right-handed 310
Helix 23	AC5	B	141	160	Right-handed alpha
Helix 24	AC6	B	161	182	Right-handed alpha
Helix 25	AC7	B	243	245	Right-handed 310
Helix 26	AC8	B	258	280	Right-handed alpha
Helix 27	AC9	B	305	312	Right-handed alpha
Helix 28	AD1	B	313	317	Right-handed 310
Helix 29	AD2	B	325	344	Right-handed alpha
Helix 30	AD3	B	372	378	Right-handed alpha
Helix 31	AD4	B	384	394	Right-handed alpha
Helix 32	AD5	C	36	44	Right-handed alpha
Helix 33	AD6	C	51	55	Right-handed 310
Helix 34	AD7	C	72	76	Right-handed 310
Helix 35	AD8	C	79	94	Right-handed alpha
Helix 36	AD9	C	108	117	Right-handed alpha
Helix 37	AE1	C	118	120	Right-handed 310
Helix 38	AE2	C	141	160	Right-handed alpha
Helix 39	AE3	C	163	182	Right-handed alpha
Helix 40	AE4	C	187	191	Right-handed 310
Helix 41	AE5	C	193	198	Right-handed alpha
Helix 42	AE6	C	242	245	Right-handed 310
Helix 43	AE7	C	258	280	Right-handed alpha
Helix 44	AE8	C	305	312	Right-handed alpha
Helix 45	AE9	C	325	344	Right-handed alpha
Helix 46	AF1	C	370	379	Right-handed alpha
Helix 47	AF2	C	384	394	Right-handed alpha
Helix 48	AF3	D	36	44	Right-handed alpha
Helix 49	AF4	D	51	55	Right-handed 310
Helix 50	AF5	D	72	77	Right-handed 310
Helix 51	AF6	D	79	94	Right-handed alpha
Helix 52	AF7	D	108	116	Right-handed alpha
Helix 53	AF8	D	117	120	Right-handed 310
Helix 54	AF9	D	141	160	Right-handed alpha
Helix 55	AG1	D	161	182	Right-handed alpha
Helix 56	AG2	D	187	191	Right-handed 310
Helix 57	AG3	D	192	198	Right-handed alpha
Helix 58	AG4	D	242	245	Right-handed 310
Helix 59	AG5	D	258	280	Right-handed alpha
Helix 60	AG6	D	304	309	Right-handed 310
Helix 61	AG7	D	325	344	Right-handed alpha
Helix 62	AG8	D	370	379	Right-handed alpha
Helix 63	AG9	D	384	394	Right-handed alpha

There are 12 sheets in PDB entry 5ULJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	363	368	anti-parallel
Strand 3	A	352	358	anti-parallel
Strand 4	A	125	132	anti-parallel
Strand 5	A	135	140	anti-parallel
Strand 6	A	104	107	parallel
Strand 7	A	221	229	parallel
Strand 8	A	209	218	anti-parallel
Strand 9	A	20	27	anti-parallel
Strand 10	A	33	34	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	A	183	184	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	232	first strand
Strand 2	A	247	254	anti-parallel
Strand 3	A	283	289	parallel
Strand 4	A	295	302	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	363	368	anti-parallel
Strand 3	B	353	358	anti-parallel
Strand 4	B	125	132	anti-parallel
Strand 5	B	135	140	anti-parallel
Strand 6	B	104	107	parallel
Strand 7	B	221	228	parallel
Strand 8	B	209	218	anti-parallel
Strand 9	B	20	27	anti-parallel
Strand 10	B	33	34	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	48	first strand
Strand 2	B	183	184	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	232	first strand
Strand 2	B	247	254	anti-parallel
Strand 3	B	283	289	parallel
Strand 4	B	295	302	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	363	368	anti-parallel
Strand 3	C	352	358	anti-parallel
Strand 4	C	125	132	anti-parallel
Strand 5	C	135	140	anti-parallel
Strand 6	C	104	107	parallel
Strand 7	C	221	228	parallel
Strand 8	C	209	218	anti-parallel
Strand 9	C	20	27	anti-parallel
Strand 10	C	33	34	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	48	first strand
Strand 2	C	183	184	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	232	first strand
Strand 2	C	247	254	anti-parallel
Strand 3	C	283	289	parallel
Strand 4	C	295	302	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	5	first strand
Strand 2	D	363	368	anti-parallel
Strand 3	D	352	358	anti-parallel
Strand 4	D	125	132	anti-parallel
Strand 5	D	135	140	anti-parallel
Strand 6	D	104	107	parallel
Strand 7	D	221	228	parallel
Strand 8	D	209	218	anti-parallel
Strand 9	D	20	27	anti-parallel
Strand 10	D	33	34	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	48	first strand
Strand 2	D	183	184	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	231	232	first strand
Strand 2	D	247	254	anti-parallel
Strand 3	D	283	289	parallel
Strand 4	D	295	302	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ULJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ULJ