Analysis of interatomic Contacts of Structural Units in PDB entry:
5ULY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ULY entry

There are 4 chains in PDB entry 5ULY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 125	ASP 366
B	HIS 128	ASP 366
C	THR 125	ASP 366
D	THR 125	ASP 366

There are 16 helices in PDB entry 5ULY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	178	182	Right-handed alpha
Helix 2	AA2	A	270	275	Right-handed alpha
Helix 3	AA3	A	294	298	Right-handed 310
Helix 4	AA4	A	312	315	Right-handed 310
Helix 5	AA5	B	178	182	Right-handed alpha
Helix 6	AA6	B	270	275	Right-handed alpha
Helix 7	AA7	B	294	298	Right-handed 310
Helix 8	AA8	B	312	315	Right-handed 310
Helix 9	AA9	C	178	182	Right-handed alpha
Helix 10	AB1	C	270	275	Right-handed alpha
Helix 11	AB2	C	294	298	Right-handed 310
Helix 12	AB3	C	312	315	Right-handed 310
Helix 13	AB4	D	178	182	Right-handed alpha
Helix 14	AB5	D	270	275	Right-handed alpha
Helix 15	AB6	D	294	298	Right-handed 310
Helix 16	AB7	D	312	315	Right-handed 310

There are 20 sheets in PDB entry 5ULY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	136	first strand
Strand 2	A	226	235	parallel
Strand 3	A	206	213	anti-parallel
Strand 4	A	168	171	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	146	first strand
Strand 2	A	193	195	anti-parallel
Strand 3	A	183	184	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	244	first strand
Strand 2	A	285	287	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	266	first strand
Strand 2	A	356	365	parallel
Strand 3	A	339	348	anti-parallel
Strand 4	A	301	309	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	319	first strand
Strand 2	A	326	328	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	136	first strand
Strand 2	B	226	235	parallel
Strand 3	B	206	213	anti-parallel
Strand 4	B	168	171	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	146	first strand
Strand 2	B	193	195	anti-parallel
Strand 3	B	183	184	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	244	first strand
Strand 2	B	285	287	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	266	first strand
Strand 2	B	356	365	parallel
Strand 3	B	339	348	anti-parallel
Strand 4	B	301	309	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	319	first strand
Strand 2	B	326	328	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	136	first strand
Strand 2	C	226	235	parallel
Strand 3	C	206	213	anti-parallel
Strand 4	C	168	171	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	146	first strand
Strand 2	C	193	195	anti-parallel
Strand 3	C	183	184	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	244	first strand
Strand 2	C	285	287	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	260	266	first strand
Strand 2	C	356	365	parallel
Strand 3	C	339	348	anti-parallel
Strand 4	C	301	309	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	317	319	first strand
Strand 2	C	326	328	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	136	first strand
Strand 2	D	225	235	parallel
Strand 3	D	206	214	anti-parallel
Strand 4	D	167	171	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	146	first strand
Strand 2	D	193	195	anti-parallel
Strand 3	D	183	184	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	242	244	first strand
Strand 2	D	285	287	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	260	266	first strand
Strand 2	D	356	365	parallel
Strand 3	D	339	348	anti-parallel
Strand 4	D	301	309	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	317	319	first strand
Strand 2	D	326	328	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ULY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ULY