Analysis of interatomic Contacts of Structural Units in PDB entry:
5UM2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UM2 entry

There is 1 chain in PDB entry 5UM2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 49LYS 364
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5UM2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 82Right-handed alpha
Helix 2
AA2
A
95 105Right-handed alpha
Helix 3
AA3
A
116 128Right-handed alpha
Helix 4
AA4
A
133 137Right-handed 310
Helix 5
AA5
A
138 143Right-handed alpha
Helix 6
AA6
A
163 169Right-handed 310
Helix 7
AA7
A
182 200Right-handed alpha
Helix 8
AA8
A
203 217Right-handed alpha
Helix 9
AA9
A
224 234Right-handed alpha
Helix 10
AB1
A
245 256Right-handed alpha
Helix 11
AB2
A
278 286Right-handed alpha
Helix 12
AB3
A
287 297Right-handed alpha
Helix 13
AB4
A
300 310Right-handed alpha
Helix 14
AB5
A
316 320Right-handed 310
Helix 15
AB6
A
321 326Right-handed alpha
Helix 16
AB7
A
335 341Right-handed alpha
Helix 17
AB8
A
342 351Right-handed alpha
Helix 18
AB9
A
355 364Right-handed alpha
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There are 4 sheets in PDB entry 5UM2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 93first strand
Strand 2
A
51 59parallel
Strand 3
A
111 113parallel
Strand 4
A
275 277anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
313 314anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
240 244parallel
Strand 3
A
149 154anti-parallel
Strand 4
A
260 263anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 269first strand
Strand 2
A
333 334parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il