Analysis of interatomic Contacts of Structural Units in PDB entry:
5UM6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UM6 entry

There is 1 chain in PDB entry 5UM6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 37LEU 1012
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 5UM6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 60Right-handed alpha
Helix 2
AA2
A
74 79Right-handed 310
Helix 3
AA3
A
84 88Right-handed 310
Helix 4
AA4
A
91 102Right-handed alpha
Helix 5
AA5
A
117 123Right-handed 310
Helix 6
AA6
A
132 146Right-handed alpha
Helix 7
AA7
A
218 223Right-handed 310
Helix 8
AA8
A
267 272Right-handed alpha
Helix 9
AA9
A
281 285Right-handed 310
Helix 10
AB1
A
287 304Right-handed alpha
Helix 11
AB2
A
314 332Right-handed alpha
Helix 12
AB3
A
339 349Right-handed alpha
Helix 13
AB4
A
354 375Right-handed alpha
Helix 14
AB5
A
389 392Right-handed 310
Helix 15
AB6
A
410 418Right-handed alpha
Helix 16
AB7
A
418 427Right-handed alpha
Helix 17
AB8
A
436 450Right-handed alpha
Helix 18
AB9
A
471 475Right-handed 310
Helix 19
AC1
A
479 483Right-handed 310
Helix 20
AC2
A
486 499Right-handed alpha
Helix 21
AC3
A
500 503Right-handed 310
Helix 22
AC4
A
522 529Right-handed alpha
Helix 23
AC5
A
538 553Right-handed alpha
Helix 24
AC6
A
591 597Right-handed alpha
Helix 25
AC7
A
601 618Right-handed alpha
Helix 26
AC8
A
618 628Right-handed alpha
Helix 27
AC9
A
632 641Right-handed alpha
Helix 28
AD1
A
643 656Right-handed alpha
Helix 29
AD2
A
662 679Right-handed alpha
Helix 30
AD3
A
679 689Right-handed alpha
Helix 31
AD4
A
718 737Right-handed alpha
Helix 32
AD5
A
743 753Right-handed alpha
Helix 33
AD6
A
785 792Right-handed alpha
Helix 34
AD7
A
796 801Right-handed 310
Helix 35
AD8
A
818 835Right-handed alpha
Helix 36
AD9
A
840 850Right-handed alpha
Helix 37
AE1
A
855 875Right-handed alpha
Helix 38
AE2
A
879 883Right-handed 310
Helix 39
AE3
A
926 937Right-handed alpha
Helix 40
AE4
A
958 963Right-handed alpha
Helix 41
AE5
A
969 978Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 5UM6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 111first strand
Strand 2
A
63 67parallel
Strand 3
A
39 43parallel
Strand 4
A
125 128parallel
Strand 5
A
149 156parallel
Strand 6
A
159 165anti-parallel
Strand 7
A
383 387anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 172first strand
Strand 2
A
261 263anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
209 213anti-parallel
Strand 3
A
253 257anti-parallel
Strand 4
A
182 189anti-parallel
Strand 5
A
193 196anti-parallel
Strand 6
A
236 238anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
209 213anti-parallel
Strand 3
A
253 257anti-parallel
Strand 4
A
182 189anti-parallel
Strand 5
A
248 250anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
506 509first strand
Strand 2
A
458 462parallel
Strand 3
A
429 433parallel
Strand 4
A
531 534parallel
Strand 5
A
556 562parallel
Strand 6
A
565 571anti-parallel
Strand 7
A
885 889anti-parallel
Strand 8
A
894 898anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
905 908first strand
Strand 2
A
911 914anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
920 923first strand
Strand 2
A
1008 1011parallel
Strand 3
A
988 996anti-parallel
Strand 4
A
941 947anti-parallel
Strand 5
A
950 954anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
920 923first strand
Strand 2
A
1008 1011parallel
Strand 3
A
988 996anti-parallel
Strand 4
A
1002 1003anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il