Analysis of interatomic Contacts of Structural Units in PDB entry:
5UMG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UMG entry

There are 2 chains in PDB entry 5UMG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1GLU 282
B
 MSE 1GLU 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5UMG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 51Right-handed alpha
Helix 2
AA2
A
70 89Right-handed alpha
Helix 3
AA3
A
99 110Right-handed alpha
Helix 4
AA4
A
124 133Right-handed alpha
Helix 5
AA5
A
156 174Right-handed alpha
Helix 6
AA6
A
178 180Right-handed 310
Helix 7
AA7
A
193 203Right-handed alpha
Helix 8
AA8
A
204 211Right-handed 310
Helix 9
AA9
A
221 229Right-handed alpha
Helix 10
AB1
A
235 249Right-handed alpha
Helix 11
AB2
A
258 275Right-handed alpha
Helix 12
AB3
B
35 51Right-handed alpha
Helix 13
AB4
B
70 89Right-handed alpha
Helix 14
AB5
B
99 110Right-handed alpha
Helix 15
AB6
B
124 133Right-handed alpha
Helix 16
AB7
B
156 175Right-handed alpha
Helix 17
AB8
B
178 180Right-handed 310
Helix 18
AB9
B
193 203Right-handed alpha
Helix 19
AC1
B
204 211Right-handed 310
Helix 20
AC2
B
221 229Right-handed alpha
Helix 21
AC3
B
235 249Right-handed alpha
Helix 22
AC4
B
258 277Right-handed alpha
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There are 6 sheets in PDB entry 5UMG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
8 9anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
92 96parallel
Strand 3
A
54 58parallel
Strand 4
A
16 22parallel
Strand 5
A
253 256parallel
Strand 6
A
215 217parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 139first strand
Strand 2
A
182 185parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
8 9anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 114first strand
Strand 2
B
92 96parallel
Strand 3
B
54 58parallel
Strand 4
B
16 22parallel
Strand 5
B
253 256parallel
Strand 6
B
215 217parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 139first strand
Strand 2
B
182 185parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il