Analysis of interatomic Contacts of Structural Units in PDB entry:
5UOF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UOF entry

There are 2 chains in PDB entry 5UOF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 8ILE 478
B
 MET 9SER 469
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 5UOF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 44Right-handed alpha
Helix 2
AA2
A
78 87Right-handed alpha
Helix 3
AA3
A
88 93Right-handed alpha
Helix 4
AA4
A
93 99Right-handed alpha
Helix 5
AA5
A
101 105Right-handed 310
Helix 6
AA6
A
108 128Right-handed alpha
Helix 7
AA7
A
141 144Right-handed 310
Helix 8
AA8
A
145 153Right-handed alpha
Helix 9
AA9
A
169 174Right-handed alpha
Helix 10
AB1
A
178 187Right-handed alpha
Helix 11
AB2
A
196 210Right-handed alpha
Helix 12
AB3
A
238 249Right-handed alpha
Helix 13
AB4
A
252 263Right-handed alpha
Helix 14
AB5
A
279 294Right-handed alpha
Helix 15
AB6
A
295 298Right-handed 310
Helix 16
AB7
A
313 336Right-handed alpha
Helix 17
AB8
A
351 362Right-handed alpha
Helix 18
AB9
A
375 385Right-handed alpha
Helix 19
AC1
A
399 404Right-handed 310
Helix 20
AC2
A
415 429Right-handed alpha
Helix 21
AC3
A
430 448Right-handed alpha
Helix 22
AC4
A
449 473Right-handed alpha
Helix 23
AC5
B
21 30Right-handed 310
Helix 24
AC6
B
31 44Right-handed alpha
Helix 25
AC7
B
78 87Right-handed alpha
Helix 26
AC8
B
88 93Right-handed alpha
Helix 27
AC9
B
93 99Right-handed alpha
Helix 28
AD1
B
101 105Right-handed 310
Helix 29
AD2
B
108 128Right-handed alpha
Helix 30
AD3
B
141 144Right-handed 310
Helix 31
AD4
B
145 153Right-handed alpha
Helix 32
AD5
B
169 174Right-handed alpha
Helix 33
AD6
B
178 187Right-handed alpha
Helix 34
AD7
B
196 210Right-handed alpha
Helix 35
AD8
B
238 249Right-handed alpha
Helix 36
AD9
B
252 263Right-handed alpha
Helix 37
AE1
B
279 294Right-handed alpha
Helix 38
AE2
B
295 298Right-handed 310
Helix 39
AE3
B
314 336Right-handed alpha
Helix 40
AE4
B
351 362Right-handed alpha
Helix 41
AE5
B
375 385Right-handed alpha
Helix 42
AE6
B
399 404Right-handed 310
Helix 43
AE7
B
415 428Right-handed alpha
Helix 44
AE8
B
430 448Right-handed alpha
Helix 45
AE9
B
449 469Right-handed alpha
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There are 4 sheets in PDB entry 5UOF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
A
70 77anti-parallel
Strand 3
A
46 54parallel
Strand 4
A
12 18parallel
Strand 5
A
135 139parallel
Strand 6
A
159 162parallel
Strand 7
A
191 194parallel
Strand 8
A
226 232parallel
Strand 9
A
221 223anti-parallel
Strand 10
A
213 215anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 346first strand
Strand 2
A
301 306parallel
Strand 3
A
266 271parallel
Strand 4
A
364 367parallel
Strand 5
A
392 396parallel
Strand 6
A
409 411parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 67first strand
Strand 2
B
70 77anti-parallel
Strand 3
B
46 54parallel
Strand 4
B
12 18parallel
Strand 5
B
135 139parallel
Strand 6
B
159 162parallel
Strand 7
B
191 194parallel
Strand 8
B
226 232parallel
Strand 9
B
221 223anti-parallel
Strand 10
B
213 215anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
343 346first strand
Strand 2
B
301 306parallel
Strand 3
B
266 271parallel
Strand 4
B
364 367parallel
Strand 5
B
392 396parallel
Strand 6
B
409 411parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il