Analysis of interatomic Contacts of Structural Units in PDB entry:
5UP4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UP4 entry

There are 18 chains in PDB entry 5UP4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	PRO 1	VAL 221
K	PRO 1	VAL 221
L	PRO 1	VAL 221
M	PRO 1	VAL 221
N	PRO 1	VAL 221
O	PRO 1	VAL 221
P	PRO 1	VAL 221
Q	PRO 1	VAL 221
R	PRO 1	VAL 221
S	PRO 1	VAL 221
C	PRO 1	VAL 221
D	PRO 1	VAL 221
E	PRO 1	VAL 221
F	PRO 1	VAL 221
G	PRO 1	VAL 221
H	PRO 1	VAL 221
I	PRO 1	VAL 221
J	PRO 1	VAL 221

There are223 helices in PDB entry 5UP4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	6	8	Right-handed 310
Helix 2	AA2	B	16	31	Right-handed alpha
Helix 3	AA3	B	35	44	Right-handed alpha
Helix 4	AA4	B	48	58	Right-handed alpha
Helix 5	AA5	B	62	84	Right-handed alpha
Helix 6	AA6	B	100	105	Right-handed alpha
Helix 7	AA7	B	110	120	Right-handed alpha
Helix 8	AA8	B	125	146	Right-handed alpha
Helix 9	AA9	B	149	153	Right-handed 310
Helix 10	AB1	B	160	174	Right-handed alpha
Helix 11	AB2	B	178	193	Right-handed alpha
Helix 12	AB3	B	195	206	Right-handed alpha
Helix 13	AB4	B	210	218	Right-handed alpha
Helix 14	AB5	K	16	31	Right-handed alpha
Helix 15	AB6	K	35	44	Right-handed alpha
Helix 16	AB7	K	48	59	Right-handed alpha
Helix 17	AB8	K	62	84	Right-handed alpha
Helix 18	AB9	K	100	105	Right-handed alpha
Helix 19	AC1	K	110	120	Right-handed alpha
Helix 20	AC2	K	125	145	Right-handed alpha
Helix 21	AC3	K	149	153	Right-handed 310
Helix 22	AC4	K	160	174	Right-handed alpha
Helix 23	AC5	K	178	193	Right-handed alpha
Helix 24	AC6	K	195	206	Right-handed alpha
Helix 25	AC7	K	210	218	Right-handed alpha
Helix 26	AC8	L	6	8	Right-handed 310
Helix 27	AC9	L	16	31	Right-handed alpha
Helix 28	AD1	L	35	44	Right-handed alpha
Helix 29	AD2	L	48	58	Right-handed alpha
Helix 30	AD3	L	62	84	Right-handed alpha
Helix 31	AD4	L	100	105	Right-handed alpha
Helix 32	AD5	L	110	120	Right-handed alpha
Helix 33	AD6	L	125	146	Right-handed alpha
Helix 34	AD7	L	149	153	Right-handed 310
Helix 35	AD8	L	160	174	Right-handed alpha
Helix 36	AD9	L	178	193	Right-handed alpha
Helix 37	AE1	L	195	205	Right-handed alpha
Helix 38	AE2	L	210	218	Right-handed alpha
Helix 39	AE3	M	6	8	Right-handed 310
Helix 40	AE4	M	16	31	Right-handed alpha
Helix 41	AE5	M	35	44	Right-handed alpha
Helix 42	AE6	M	48	58	Right-handed alpha
Helix 43	AE7	M	62	84	Right-handed alpha
Helix 44	AE8	M	100	105	Right-handed alpha
Helix 45	AE9	M	110	120	Right-handed alpha
Helix 46	AF1	M	125	145	Right-handed alpha
Helix 47	AF2	M	149	153	Right-handed 310
Helix 48	AF3	M	160	174	Right-handed alpha
Helix 49	AF4	M	178	193	Right-handed alpha
Helix 50	AF5	M	195	206	Right-handed alpha
Helix 51	AF6	M	210	218	Right-handed alpha
Helix 52	AF7	N	6	8	Right-handed 310
Helix 53	AF8	N	16	31	Right-handed alpha
Helix 54	AF9	N	35	45	Right-handed alpha
Helix 55	AG1	N	48	58	Right-handed alpha
Helix 56	AG2	N	62	84	Right-handed alpha
Helix 57	AG3	N	100	105	Right-handed alpha
Helix 58	AG4	N	110	120	Right-handed alpha
Helix 59	AG5	N	125	146	Right-handed alpha
Helix 60	AG6	N	149	153	Right-handed 310
Helix 61	AG7	N	160	175	Right-handed alpha
Helix 62	AG8	N	178	193	Right-handed alpha
Helix 63	AG9	N	195	206	Right-handed alpha
Helix 64	AH1	N	210	218	Right-handed alpha
Helix 65	AH2	O	16	31	Right-handed alpha
Helix 66	AH3	O	35	44	Right-handed alpha
Helix 67	AH4	O	48	58	Right-handed alpha
Helix 68	AH5	O	62	84	Right-handed alpha
Helix 69	AH6	O	100	105	Right-handed alpha
Helix 70	AH7	O	110	120	Right-handed alpha
Helix 71	AH8	O	125	146	Right-handed alpha
Helix 72	AH9	O	149	153	Right-handed 310
Helix 73	AI1	O	160	174	Right-handed alpha
Helix 74	AI2	O	178	193	Right-handed alpha
Helix 75	AI3	O	195	206	Right-handed alpha
Helix 76	AI4	O	210	218	Right-handed alpha
Helix 77	AI5	P	16	31	Right-handed alpha
Helix 78	AI6	P	35	44	Right-handed alpha
Helix 79	AI7	P	48	58	Right-handed alpha
Helix 80	AI8	P	62	84	Right-handed alpha
Helix 81	AI9	P	100	105	Right-handed alpha
Helix 82	AJ1	P	110	120	Right-handed alpha
Helix 83	AJ2	P	125	146	Right-handed alpha
Helix 84	AJ3	P	149	153	Right-handed 310
Helix 85	AJ4	P	160	174	Right-handed alpha
Helix 86	AJ5	P	178	193	Right-handed alpha
Helix 87	AJ6	P	195	205	Right-handed alpha
Helix 88	AJ7	P	210	218	Right-handed alpha
Helix 89	AJ8	Q	16	31	Right-handed alpha
Helix 90	AJ9	Q	35	44	Right-handed alpha
Helix 91	AK1	Q	48	58	Right-handed alpha
Helix 92	AK2	Q	62	84	Right-handed alpha
Helix 93	AK3	Q	100	105	Right-handed alpha
Helix 94	AK4	Q	110	120	Right-handed alpha
Helix 95	AK5	Q	125	146	Right-handed alpha
Helix 96	AK6	Q	160	174	Right-handed alpha
Helix 97	AK7	Q	178	193	Right-handed alpha
Helix 98	AK8	Q	195	206	Right-handed alpha
Helix 99	AK9	Q	210	218	Right-handed alpha
Helix 100	AL1	R	16	31	Right-handed alpha
Helix 101	AL2	R	35	44	Right-handed alpha
Helix 102	AL3	R	48	58	Right-handed alpha
Helix 103	AL4	R	62	84	Right-handed alpha
Helix 104	AL5	R	100	105	Right-handed alpha
Helix 105	AL6	R	110	120	Right-handed alpha
Helix 106	AL7	R	125	146	Right-handed alpha
Helix 107	AL8	R	149	153	Right-handed 310
Helix 108	AL9	R	160	174	Right-handed alpha
Helix 109	AM1	R	178	193	Right-handed alpha
Helix 110	AM2	R	195	205	Right-handed alpha
Helix 111	AM3	R	210	218	Right-handed alpha
Helix 112	AM4	S	6	8	Right-handed 310
Helix 113	AM5	S	16	31	Right-handed alpha
Helix 114	AM6	S	35	44	Right-handed alpha
Helix 115	AM7	S	48	58	Right-handed alpha
Helix 116	AM8	S	62	84	Right-handed alpha
Helix 117	AM9	S	100	105	Right-handed alpha
Helix 118	AN1	S	110	120	Right-handed alpha
Helix 119	AN2	S	125	146	Right-handed alpha
Helix 120	AN3	S	149	153	Right-handed 310
Helix 121	AN4	S	160	174	Right-handed alpha
Helix 122	AN5	S	178	193	Right-handed alpha
Helix 123	AN6	S	195	206	Right-handed alpha
Helix 124	AN7	S	210	218	Right-handed alpha
Helix 125	AN8	C	16	31	Right-handed alpha
Helix 126	AN9	C	35	44	Right-handed alpha
Helix 127	AO1	C	48	58	Right-handed alpha
Helix 128	AO2	C	62	84	Right-handed alpha
Helix 129	AO3	C	100	105	Right-handed alpha
Helix 130	AO4	C	110	120	Right-handed alpha
Helix 131	AO5	C	125	145	Right-handed alpha
Helix 132	AO6	C	149	153	Right-handed 310
Helix 133	AO7	C	160	174	Right-handed alpha
Helix 134	AO8	C	178	193	Right-handed alpha
Helix 135	AO9	C	195	206	Right-handed alpha
Helix 136	AP1	C	210	218	Right-handed alpha
Helix 137	AP2	D	6	8	Right-handed 310
Helix 138	AP3	D	16	31	Right-handed alpha
Helix 139	AP4	D	35	44	Right-handed alpha
Helix 140	AP5	D	48	58	Right-handed alpha
Helix 141	AP6	D	62	84	Right-handed alpha
Helix 142	AP7	D	100	105	Right-handed alpha
Helix 143	AP8	D	110	120	Right-handed alpha
Helix 144	AP9	D	125	145	Right-handed alpha
Helix 145	AQ1	D	149	153	Right-handed 310
Helix 146	AQ2	D	160	174	Right-handed alpha
Helix 147	AQ3	D	178	193	Right-handed alpha
Helix 148	AQ4	D	195	205	Right-handed alpha
Helix 149	AQ5	D	210	218	Right-handed alpha
Helix 150	AQ6	E	16	31	Right-handed alpha
Helix 151	AQ7	E	35	44	Right-handed alpha
Helix 152	AQ8	E	48	58	Right-handed alpha
Helix 153	AQ9	E	62	84	Right-handed alpha
Helix 154	AR1	E	100	105	Right-handed alpha
Helix 155	AR2	E	110	120	Right-handed alpha
Helix 156	AR3	E	125	146	Right-handed alpha
Helix 157	AR4	E	149	153	Right-handed 310
Helix 158	AR5	E	160	174	Right-handed alpha
Helix 159	AR6	E	178	193	Right-handed alpha
Helix 160	AR7	E	195	206	Right-handed alpha
Helix 161	AR8	E	210	218	Right-handed alpha
Helix 162	AR9	F	6	8	Right-handed 310
Helix 163	AS1	F	16	31	Right-handed alpha
Helix 164	AS2	F	35	44	Right-handed alpha
Helix 165	AS3	F	48	58	Right-handed alpha
Helix 166	AS4	F	62	84	Right-handed alpha
Helix 167	AS5	F	100	105	Right-handed alpha
Helix 168	AS6	F	110	120	Right-handed alpha
Helix 169	AS7	F	125	146	Right-handed alpha
Helix 170	AS8	F	149	153	Right-handed 310
Helix 171	AS9	F	160	174	Right-handed alpha
Helix 172	AT1	F	178	193	Right-handed alpha
Helix 173	AT2	F	195	206	Right-handed alpha
Helix 174	AT3	F	210	218	Right-handed alpha
Helix 175	AT4	G	16	31	Right-handed alpha
Helix 176	AT5	G	35	44	Right-handed alpha
Helix 177	AT6	G	48	58	Right-handed alpha
Helix 178	AT7	G	62	84	Right-handed alpha
Helix 179	AT8	G	100	105	Right-handed alpha
Helix 180	AT9	G	110	120	Right-handed alpha
Helix 181	AU1	G	125	146	Right-handed alpha
Helix 182	AU2	G	149	153	Right-handed 310
Helix 183	AU3	G	160	174	Right-handed alpha
Helix 184	AU4	G	178	193	Right-handed alpha
Helix 185	AU5	G	195	205	Right-handed alpha
Helix 186	AU6	G	210	218	Right-handed alpha
Helix 187	AU7	H	6	8	Right-handed 310
Helix 188	AU8	H	16	31	Right-handed alpha
Helix 189	AU9	H	35	44	Right-handed alpha
Helix 190	AV1	H	48	58	Right-handed alpha
Helix 191	AV2	H	62	84	Right-handed alpha
Helix 192	AV3	H	100	105	Right-handed alpha
Helix 193	AV4	H	110	120	Right-handed alpha
Helix 194	AV5	H	125	146	Right-handed alpha
Helix 195	AV6	H	149	153	Right-handed 310
Helix 196	AV7	H	160	174	Right-handed alpha
Helix 197	AV8	H	178	193	Right-handed alpha
Helix 198	AV9	H	195	205	Right-handed alpha
Helix 199	AW1	H	210	218	Right-handed alpha
Helix 200	AW2	I	16	31	Right-handed alpha
Helix 201	AW3	I	35	44	Right-handed alpha
Helix 202	AW4	I	48	58	Right-handed alpha
Helix 203	AW5	I	62	84	Right-handed alpha
Helix 204	AW6	I	100	105	Right-handed alpha
Helix 205	AW7	I	110	120	Right-handed alpha
Helix 206	AW8	I	125	145	Right-handed alpha
Helix 207	AW9	I	149	153	Right-handed 310
Helix 208	AX1	I	160	174	Right-handed alpha
Helix 209	AX2	I	178	193	Right-handed alpha
Helix 210	AX3	I	195	206	Right-handed alpha
Helix 211	AX4	I	210	218	Right-handed alpha
Helix 212	AX5	J	16	31	Right-handed alpha
Helix 213	AX6	J	35	44	Right-handed alpha
Helix 214	AX7	J	48	58	Right-handed alpha
Helix 215	AX8	J	62	84	Right-handed alpha
Helix 216	AX9	J	100	105	Right-handed alpha
Helix 217	AY1	J	110	120	Right-handed alpha
Helix 218	AY2	J	125	146	Right-handed alpha
Helix 219	AY3	J	149	153	Right-handed 310
Helix 220	AY4	J	160	175	Right-handed alpha
Helix 221	AY5	J	178	193	Right-handed alpha
Helix 222	AY6	J	195	206	Right-handed alpha
Helix 223	AY7	J	210	218	Right-handed alpha

There are 18 sheets in PDB entry 5UP4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	9	12	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	2	5	first strand
Strand 2	K	9	12	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	2	4	first strand
Strand 2	L	10	12	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	2	5	first strand
Strand 2	M	9	12	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	2	4	first strand
Strand 2	N	10	12	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	2	5	first strand
Strand 2	O	9	12	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	2	4	first strand
Strand 2	P	10	12	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	2	5	first strand
Strand 2	Q	9	12	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	2	5	first strand
Strand 2	R	9	12	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	2	4	first strand
Strand 2	S	10	12	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	5	first strand
Strand 2	C	9	12	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	5	first strand
Strand 2	D	9	12	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	5	first strand
Strand 2	E	9	12	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	4	first strand
Strand 2	F	10	12	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	5	first strand
Strand 2	G	9	12	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	4	first strand
Strand 2	H	10	12	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	2	5	first strand
Strand 2	I	9	12	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	2	4	first strand
Strand 2	J	10	12	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UP4

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UP4