Analysis of interatomic Contacts of Structural Units in PDB entry:
5UPH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UPH entry

There are 2 chains in PDB entry 5UPH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 51	ILE 429
B	ASP 51	ILE 429

There are 23 helices in PDB entry 5UPH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	71	77	Right-handed alpha
Helix 2	AA2	A	121	124	Right-handed 310
Helix 3	AA3	A	137	149	Right-handed alpha
Helix 4	AA4	A	152	163	Right-handed alpha
Helix 5	AA5	A	173	179	Right-handed alpha
Helix 6	AA6	A	182	192	Right-handed alpha
Helix 7	AA7	A	327	331	Right-handed 310
Helix 8	AA8	A	340	343	Right-handed 310
Helix 9	AA9	A	346	352	Right-handed alpha
Helix 10	AB1	A	359	364	Right-handed alpha
Helix 11	AB2	A	395	399	Right-handed 310
Helix 12	AB3	A	418	428	Right-handed alpha
Helix 13	AB4	B	71	77	Right-handed alpha
Helix 14	AB5	B	121	124	Right-handed 310
Helix 15	AB6	B	137	149	Right-handed alpha
Helix 16	AB7	B	152	163	Right-handed alpha
Helix 17	AB8	B	173	179	Right-handed alpha
Helix 18	AB9	B	182	192	Right-handed alpha
Helix 19	AC1	B	327	331	Right-handed 310
Helix 20	AC2	B	340	343	Right-handed 310
Helix 21	AC3	B	346	352	Right-handed alpha
Helix 22	AC4	B	359	364	Right-handed alpha
Helix 23	AC5	B	418	426	Right-handed alpha

There are 8 sheets in PDB entry 5UPH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	119	first strand
Strand 2	A	83	95	anti-parallel
Strand 3	A	60	69	anti-parallel
Strand 4	A	404	416	anti-parallel
Strand 5	A	376	389	anti-parallel
Strand 6	A	366	369	anti-parallel
Strand 7	A	290	296	anti-parallel
Strand 8	A	277	287	anti-parallel
Strand 9	A	265	269	anti-parallel
Strand 10	A	213	215	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	119	first strand
Strand 2	A	83	95	anti-parallel
Strand 3	A	60	69	anti-parallel
Strand 4	A	404	416	anti-parallel
Strand 5	A	376	389	anti-parallel
Strand 6	A	335	338	anti-parallel
Strand 7	A	323	325	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	136	first strand
Strand 2	A	168	172	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	181	first strand
Strand 2	A	198	199	anti-parallel

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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	119	first strand
Strand 2	B	83	95	anti-parallel
Strand 3	B	60	69	anti-parallel
Strand 4	B	404	416	anti-parallel
Strand 5	B	376	389	anti-parallel
Strand 6	B	366	369	anti-parallel
Strand 7	B	290	296	anti-parallel
Strand 8	B	277	287	anti-parallel
Strand 9	B	266	269	anti-parallel
Strand 10	B	213	216	anti-parallel
Strand 11	B	228	231	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	119	first strand
Strand 2	B	83	95	anti-parallel
Strand 3	B	60	69	anti-parallel
Strand 4	B	404	416	anti-parallel
Strand 5	B	376	389	anti-parallel
Strand 6	B	335	338	anti-parallel
Strand 7	B	323	325	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	136	first strand
Strand 2	B	168	172	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	181	first strand
Strand 2	B	198	199	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UPH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UPH