Analysis of interatomic Contacts of Structural Units in PDB entry:
5UPL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UPL entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 5UPL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 299LYS 473
A
 LEU 475ARG 589
B
 GLN 2LEU 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5UPL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
299 312Right-handed alpha
Helix 2
AA2
A
355 357Right-handed 310
Helix 3
AA3
A
359 361Right-handed 310
Helix 4
AA4
A
362 373Right-handed alpha
Helix 5
AA5
A
403 410Right-handed alpha
Helix 6
AA6
A
413 433Right-handed alpha
Helix 7
AA7
A
442 444Right-handed 310
Helix 8
AA8
A
478 482Right-handed 310
Helix 9
AA9
A
483 488Right-handed alpha
Helix 10
AB1
A
494 511Right-handed alpha
Helix 11
AB2
A
519 530Right-handed alpha
Helix 12
AB3
A
542 553Right-handed alpha
Helix 13
AB4
A
562 568Right-handed alpha
Helix 14
AB5
A
569 575Right-handed 310
Helix 15
AB6
A
577 585Right-handed 310
Helix 16
AB7
B
15 26Right-handed alpha
Helix 17
AB8
B
68 72Right-handed 310
Helix 18
AB9
B
86 96Right-handed alpha
Helix 19
AC1
B
96 105Right-handed alpha
Helix 20
AC2
B
116 120Right-handed 310
Helix 21
AC3
B
122 131Right-handed alpha
Helix 22
AC4
B
138 149Right-handed alpha
Helix 23
AC5
B
164 177Right-handed alpha
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There are 4 sheets in PDB entry 5UPL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 329first strand
Strand 2
A
334 340anti-parallel
Strand 3
A
346 353anti-parallel
Strand 4
A
390 396anti-parallel
Strand 5
A
381 387anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 402first strand
Strand 2
A
446 448anti-parallel
Strand 3
A
454 456anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 437first strand
Strand 2
A
463 464anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 46first strand
Strand 2
B
49 57anti-parallel
Strand 3
B
3 9parallel
Strand 4
B
77 83parallel
Strand 5
B
110 115parallel
Strand 6
B
154 156parallel
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