Analysis of interatomic Contacts of Structural Units in PDB entry:
5UPT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UPT entry

There is 1 chain in PDB entry 5UPT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -1PRO 513
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5UPT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 17Right-handed alpha
Helix 2
AA2
A
32 49Right-handed alpha
Helix 3
AA3
A
64 77Right-handed alpha
Helix 4
AA4
A
89 101Right-handed alpha
Helix 5
AA5
A
112 124Right-handed alpha
Helix 6
AA6
A
125 127Right-handed 310
Helix 7
AA7
A
143 150Right-handed alpha
Helix 8
AA8
A
185 200Right-handed alpha
Helix 9
AA9
A
215 221Right-handed alpha
Helix 10
AB1
A
222 229Right-handed alpha
Helix 11
AB2
A
240 251Right-handed alpha
Helix 12
AB3
A
259 271Right-handed alpha
Helix 13
AB4
A
285 290Right-handed 310
Helix 14
AB5
A
298 303Right-handed alpha
Helix 15
AB6
A
304 308Right-handed 310
Helix 16
AB7
A
314 317Right-handed 310
Helix 17
AB8
A
374 382Right-handed alpha
Helix 18
AB9
A
383 386Right-handed 310
Helix 19
AC1
A
419 429Right-handed alpha
Helix 20
AC2
A
463 472Right-handed alpha
Helix 21
AC3
A
476 480Right-handed 310
Helix 22
AC4
A
499 508Right-handed alpha
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There are 7 sheets in PDB entry 5UPT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
21 25anti-parallel
Strand 3
A
232 235parallel
Strand 4
A
206 209parallel
Strand 5
A
255 256parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 133first strand
Strand 2
A
104 107parallel
Strand 3
A
56 60parallel
Strand 4
A
80 83parallel
Strand 5
A
165 172parallel
Strand 6
A
178 184anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 282first strand
Strand 2
A
294 295parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 313first strand
Strand 2
A
318 322anti-parallel
Strand 3
A
335 336anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 345first strand
Strand 2
A
358 363anti-parallel
Strand 3
A
387 395anti-parallel
Strand 4
A
401 406anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 413first strand
Strand 2
A
416 418anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 443first strand
Strand 2
A
447 456anti-parallel
Strand 3
A
483 486parallel
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