Analysis of interatomic Contacts of Structural Units in PDB entry:
5UPY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UPY entry

There is 1 chain in PDB entry 5UPY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -1SER 486
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5UPY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-1 4Right-handed alpha
Helix 2
AA2
A
12 14Right-handed 310
Helix 3
AA3
A
26 30Right-handed 310
Helix 4
AA4
A
56 66Right-handed alpha
Helix 5
AA5
A
77 90Right-handed alpha
Helix 6
AA6
A
232 243Right-handed alpha
Helix 7
AA7
A
257 271Right-handed alpha
Helix 8
AA8
A
283 292Right-handed alpha
Helix 9
AA9
A
309 314Right-handed alpha
Helix 10
AB1
A
319 335Right-handed alpha
Helix 11
AB2
A
346 356Right-handed alpha
Helix 12
AB3
A
393 400Right-handed alpha
Helix 13
AB4
A
427 447Right-handed alpha
Helix 14
AB5
A
450 458Right-handed alpha
Helix 15
AB6
A
464 472Right-handed alpha
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There are 4 sheets in PDB entry 5UPY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
460 462anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 37first strand
Strand 2
A
40 42anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
69 72parallel
Strand 3
A
224 227parallel
Strand 4
A
247 251parallel
Strand 5
A
275 281parallel
Strand 6
A
297 300parallel
Strand 7
A
337 341parallel
Strand 8
A
360 363parallel
Strand 9
A
46 48parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 380first strand
Strand 2
A
383 389anti-parallel
Strand 3
A
419 423anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il