Analysis of interatomic Contacts of Structural Units in PDB entry:
5UQ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UQ1 entry

There are 4 chains in PDB entry 5UQ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3LEU 296
B
 GLN 67SER 200
C
 MET 1VAL 289
D
 CYS 63VAL 201
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 5UQ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 56Right-handed alpha
Helix 2
AA2
A
87 94Right-handed alpha
Helix 3
AA3
A
100 121Right-handed alpha
Helix 4
AA4
A
129 131Right-handed 310
Helix 5
AA5
A
165 169Right-handed 310
Helix 6
AA6
A
170 175Right-handed alpha
Helix 7
AA7
A
182 198Right-handed alpha
Helix 8
AA8
A
207 220Right-handed alpha
Helix 9
AA9
A
229 233Right-handed 310
Helix 10
AB1
A
247 252Right-handed alpha
Helix 11
AB2
A
258 267Right-handed alpha
Helix 12
AB3
A
276 281Right-handed alpha
Helix 13
AB4
B
71 76Right-handed alpha
Helix 14
AB5
B
77 79Right-handed 310
Helix 15
AB6
B
80 90Right-handed alpha
Helix 16
AB7
B
97 111Right-handed alpha
Helix 17
AB8
B
114 118Right-handed 310
Helix 18
AB9
B
119 135Right-handed alpha
Helix 19
AC1
B
139 142Right-handed 310
Helix 20
AC2
B
143 150Right-handed alpha
Helix 21
AC3
B
152 155Right-handed 310
Helix 22
AC4
B
156 171Right-handed alpha
Helix 23
AC5
B
178 186Right-handed alpha
Helix 24
AC6
B
192 197Right-handed 310
Helix 25
AC7
C
45 56Right-handed alpha
Helix 26
AC8
C
87 94Right-handed alpha
Helix 27
AC9
C
100 121Right-handed alpha
Helix 28
AD1
C
129 131Right-handed 310
Helix 29
AD2
C
165 169Right-handed 310
Helix 30
AD3
C
170 175Right-handed alpha
Helix 31
AD4
C
182 198Right-handed alpha
Helix 32
AD5
C
207 220Right-handed alpha
Helix 33
AD6
C
229 233Right-handed 310
Helix 34
AD7
C
258 267Right-handed alpha
Helix 35
AD8
C
276 282Right-handed alpha
Helix 36
AD9
D
71 76Right-handed alpha
Helix 37
AE1
D
77 79Right-handed 310
Helix 38
AE2
D
80 90Right-handed alpha
Helix 39
AE3
D
97 111Right-handed alpha
Helix 40
AE4
D
114 118Right-handed 310
Helix 41
AE5
D
119 135Right-handed alpha
Helix 42
AE6
D
139 142Right-handed 310
Helix 43
AE7
D
143 150Right-handed alpha
Helix 44
AE8
D
152 155Right-handed 310
Helix 45
AE9
D
156 171Right-handed alpha
Helix 46
AF1
D
178 186Right-handed alpha
Helix 47
AF2
D
192 197Right-handed 310
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There are 6 sheets in PDB entry 5UQ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
16 21anti-parallel
Strand 3
A
30 35anti-parallel
Strand 4
A
76 81anti-parallel
Strand 5
A
66 71anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
133 135anti-parallel
Strand 3
A
141 143anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
150 151anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 12first strand
Strand 2
C
16 23anti-parallel
Strand 3
C
29 35anti-parallel
Strand 4
C
76 81anti-parallel
Strand 5
C
66 71anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
85 86first strand
Strand 2
C
133 135anti-parallel
Strand 3
C
141 143anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
123 124first strand
Strand 2
C
150 151anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il