Analysis of interatomic Contacts of Structural Units in PDB entry:
5UQ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UQ3 entry

There are 3 chains in PDB entry 5UQ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 19PRO 292
B
 GLN 67VAL 201
C
 ASP 557LYS 602
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5UQ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 56Right-handed alpha
Helix 2
AA2
A
87 92Right-handed alpha
Helix 3
AA3
A
100 121Right-handed alpha
Helix 4
AA4
A
129 131Right-handed 310
Helix 5
AA5
A
165 169Right-handed 310
Helix 6
AA6
A
170 175Right-handed alpha
Helix 7
AA7
A
182 199Right-handed alpha
Helix 8
AA8
A
210 219Right-handed alpha
Helix 9
AA9
A
229 233Right-handed 310
Helix 10
AB1
A
247 252Right-handed alpha
Helix 11
AB2
A
256 267Right-handed alpha
Helix 12
AB3
A
276 281Right-handed alpha
Helix 13
AB4
A
283 289Right-handed 310
Helix 14
AB5
B
71 76Right-handed alpha
Helix 15
AB6
B
77 79Right-handed 310
Helix 16
AB7
B
80 90Right-handed alpha
Helix 17
AB8
B
99 111Right-handed alpha
Helix 18
AB9
B
119 135Right-handed alpha
Helix 19
AC1
B
139 143Right-handed 310
Helix 20
AC2
B
144 150Right-handed alpha
Helix 21
AC3
B
157 171Right-handed alpha
Helix 22
AC4
B
178 186Right-handed alpha
Helix 23
AC5
B
192 197Right-handed 310
Helix 24
AC6
C
558 567Right-handed alpha
Helix 25
AC7
C
586 590Right-handed 310
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There are 2 sheets in PDB entry 5UQ3. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
80 81anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
133 135anti-parallel
Strand 3
A
141 143anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il