Analysis of interatomic Contacts of Structural Units in PDB entry:
5UQD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UQD entry

There is 1 chain in PDB entry 5UQD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 1208LEU 1610
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5UQD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1208 1223Right-handed alpha
Helix 2
AA2
A
1231 1236Right-handed alpha
Helix 3
AA3
A
1255 1259Right-handed alpha
Helix 4
AA4
A
1263 1279Right-handed alpha
Helix 5
AA5
A
1302 1311Right-handed alpha
Helix 6
AA6
A
1332 1342Right-handed alpha
Helix 7
AA7
A
1370 1379Right-handed alpha
Helix 8
AA8
A
1383 1387Right-handed 310
Helix 9
AA9
A
1402 1406Right-handed 310
Helix 10
AB1
A
1518 1522Right-handed 310
Helix 11
AB2
A
1535 1543Right-handed alpha
Helix 12
AB3
A
1550 1554Right-handed 310
Helix 13
AB4
A
1560 1569Right-handed alpha
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There are 7 sheets in PDB entry 5UQD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1239 1242first strand
Strand 2
A
1249 1254anti-parallel
Strand 3
A
1290 1294parallel
Strand 4
A
1584 1587anti-parallel
Strand 5
A
1498 1505anti-parallel
Strand 6
A
1601 1608anti-parallel
Strand 7
A
1408 1412anti-parallel
Strand 8
A
1353 1357anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1281 1282first strand
Strand 2
A
1285 1286anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1315 1319first strand
Strand 2
A
1327 1331anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1343 1344first strand
Strand 2
A
1347 1348anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1416 1418first strand
Strand 2
A
1443 1445anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1448 1452first strand
Strand 2
A
1593 1597anti-parallel
Strand 3
A
1524 1531anti-parallel
Strand 4
A
1574 1580anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1455 1456first strand
Strand 2
A
1495 1496anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il