Analysis of interatomic Contacts of Structural Units in PDB entry:
5UQE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UQE entry

There are 5 chains in PDB entry 5UQE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 139	GLN 643
B	LEU 139	GLN 643
C	SER 138	PHE 639
D	PRO 137	GLN 643
F	SER 138	ARG 544

There are128 helices in PDB entry 5UQE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	139	149	Right-handed alpha
Helix 2	AA2	A	155	164	Right-handed alpha
Helix 3	AA3	A	172	174	Right-handed 310
Helix 4	AA4	A	175	185	Right-handed alpha
Helix 5	AA5	A	196	205	Right-handed alpha
Helix 6	AA6	A	207	216	Right-handed alpha
Helix 7	AA7	A	224	240	Right-handed alpha
Helix 8	AA8	A	250	256	Right-handed alpha
Helix 9	AA9	A	285	287	Right-handed 310
Helix 10	AB1	A	288	301	Right-handed alpha
Helix 11	AB2	A	301	306	Right-handed alpha
Helix 12	AB3	A	334	343	Right-handed alpha
Helix 13	AB4	A	350	366	Right-handed alpha
Helix 14	AB5	A	374	381	Right-handed alpha
Helix 15	AB6	A	385	399	Right-handed alpha
Helix 16	AB7	A	406	418	Right-handed alpha
Helix 17	AB8	A	423	436	Right-handed alpha
Helix 18	AB9	A	449	463	Right-handed alpha
Helix 19	AC1	A	468	476	Right-handed alpha
Helix 20	AC2	A	512	523	Right-handed alpha
Helix 21	AC3	A	554	559	Right-handed alpha
Helix 22	AC4	A	560	562	Right-handed 310
Helix 23	AC5	A	566	572	Right-handed alpha
Helix 24	AC6	A	588	597	Right-handed alpha
Helix 25	AC7	A	598	610	Right-handed alpha
Helix 26	AC8	A	624	630	Right-handed alpha
Helix 27	AC9	A	635	636	Right-handed 310
Helix 28	AD1	A	638	641	Right-handed 310
Helix 29	AD2	B	140	149	Right-handed alpha
Helix 30	AD3	B	155	165	Right-handed alpha
Helix 31	AD4	B	172	175	Right-handed 310
Helix 32	AD5	B	176	186	Right-handed alpha
Helix 33	AD6	B	196	205	Right-handed alpha
Helix 34	AD7	B	207	216	Right-handed alpha
Helix 35	AD8	B	224	239	Right-handed alpha
Helix 36	AD9	B	285	287	Right-handed 310
Helix 37	AE1	B	288	301	Right-handed alpha
Helix 38	AE2	B	301	306	Right-handed alpha
Helix 39	AE3	B	334	343	Right-handed alpha
Helix 40	AE4	B	352	366	Right-handed alpha
Helix 41	AE5	B	374	384	Right-handed alpha
Helix 42	AE6	B	386	398	Right-handed alpha
Helix 43	AE7	B	407	419	Right-handed alpha
Helix 44	AE8	B	424	436	Right-handed alpha
Helix 45	AE9	B	449	463	Right-handed alpha
Helix 46	AF1	B	468	476	Right-handed alpha
Helix 47	AF2	B	511	523	Right-handed alpha
Helix 48	AF3	B	545	554	Right-handed alpha
Helix 49	AF4	B	558	564	Right-handed alpha
Helix 50	AF5	B	566	574	Right-handed alpha
Helix 51	AF6	B	588	597	Right-handed alpha
Helix 52	AF7	B	598	607	Right-handed alpha
Helix 53	AF8	B	622	631	Right-handed alpha
Helix 54	AF9	B	632	643	Right-handed alpha
Helix 55	AG1	C	140	149	Right-handed alpha
Helix 56	AG2	C	155	164	Right-handed alpha
Helix 57	AG3	C	165	167	Right-handed 310
Helix 58	AG4	C	172	174	Right-handed 310
Helix 59	AG5	C	175	187	Right-handed alpha
Helix 60	AG6	C	196	205	Right-handed alpha
Helix 61	AG7	C	207	216	Right-handed alpha
Helix 62	AG8	C	224	240	Right-handed alpha
Helix 63	AG9	C	250	256	Right-handed alpha
Helix 64	AH1	C	285	287	Right-handed 310
Helix 65	AH2	C	288	306	Right-handed alpha
Helix 66	AH3	C	334	343	Right-handed alpha
Helix 67	AH4	C	352	366	Right-handed alpha
Helix 68	AH5	C	374	384	Right-handed alpha
Helix 69	AH6	C	385	398	Right-handed alpha
Helix 70	AH7	C	407	420	Right-handed alpha
Helix 71	AH8	C	423	436	Right-handed alpha
Helix 72	AH9	C	449	464	Right-handed alpha
Helix 73	AI1	C	468	476	Right-handed alpha
Helix 74	AI2	C	511	523	Right-handed alpha
Helix 75	AI3	C	564	568	Right-handed alpha
Helix 76	AI4	C	568	573	Right-handed alpha
Helix 77	AI5	C	575	581	Right-handed alpha
Helix 78	AI6	C	582	585	Right-handed 310
Helix 79	AI7	C	597	606	Right-handed alpha
Helix 80	AI8	C	607	617	Right-handed alpha
Helix 81	AI9	C	631	637	Right-handed alpha
Helix 82	AJ1	D	140	149	Right-handed alpha
Helix 83	AJ2	D	155	164	Right-handed alpha
Helix 84	AJ3	D	165	167	Right-handed 310
Helix 85	AJ4	D	176	187	Right-handed alpha
Helix 86	AJ5	D	196	205	Right-handed alpha
Helix 87	AJ6	D	207	216	Right-handed alpha
Helix 88	AJ7	D	224	240	Right-handed alpha
Helix 89	AJ8	D	250	256	Right-handed alpha
Helix 90	AJ9	D	285	287	Right-handed 310
Helix 91	AK1	D	288	306	Right-handed alpha
Helix 92	AK2	D	334	343	Right-handed alpha
Helix 93	AK3	D	352	366	Right-handed alpha
Helix 94	AK4	D	374	384	Right-handed alpha
Helix 95	AK5	D	386	398	Right-handed alpha
Helix 96	AK6	D	406	419	Right-handed alpha
Helix 97	AK7	D	424	436	Right-handed alpha
Helix 98	AK8	D	449	464	Right-handed alpha
Helix 99	AK9	D	465	467	Right-handed 310
Helix 100	AL1	D	468	476	Right-handed alpha
Helix 101	AL2	D	511	523	Right-handed alpha
Helix 102	AL3	D	547	551	Right-handed 310
Helix 103	AL4	D	554	559	Right-handed alpha
Helix 104	AL5	D	560	562	Right-handed 310
Helix 105	AL6	D	566	574	Right-handed alpha
Helix 106	AL7	D	588	597	Right-handed alpha
Helix 107	AL8	D	598	606	Right-handed alpha
Helix 108	AL9	D	622	631	Right-handed alpha
Helix 109	AM1	D	632	640	Right-handed alpha
Helix 110	AM2	F	140	147	Right-handed alpha
Helix 111	AM3	F	156	164	Right-handed alpha
Helix 112	AM4	F	165	167	Right-handed 310
Helix 113	AM5	F	172	174	Right-handed 310
Helix 114	AM6	F	175	186	Right-handed alpha
Helix 115	AM7	F	197	204	Right-handed alpha
Helix 116	AM8	F	207	216	Right-handed alpha
Helix 117	AM9	F	223	240	Right-handed alpha
Helix 118	AN1	F	287	301	Right-handed alpha
Helix 119	AN2	F	301	306	Right-handed alpha
Helix 120	AN3	F	334	343	Right-handed alpha
Helix 121	AN4	F	350	366	Right-handed alpha
Helix 122	AN5	F	374	383	Right-handed alpha
Helix 123	AN6	F	386	398	Right-handed alpha
Helix 124	AN7	F	406	420	Right-handed alpha
Helix 125	AN8	F	423	436	Right-handed alpha
Helix 126	AN9	F	449	464	Right-handed alpha
Helix 127	AO1	F	468	476	Right-handed alpha
Helix 128	AO2	F	511	523	Right-handed alpha

There are 14 sheets in PDB entry 5UQE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	276	first strand
Strand 2	A	262	267	anti-parallel
Strand 3	A	496	501	anti-parallel
Strand 4	A	487	492	anti-parallel
Strand 5	A	480	483	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	283	first strand
Strand 2	A	421	422	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	505	506	first strand
Strand 2	A	510	511	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	246	first strand
Strand 2	B	504	505	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	276	first strand
Strand 2	B	262	267	anti-parallel
Strand 3	B	496	501	anti-parallel
Strand 4	B	487	492	anti-parallel
Strand 5	B	480	482	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	283	first strand
Strand 2	B	421	423	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	275	first strand
Strand 2	C	262	267	anti-parallel
Strand 3	C	496	501	anti-parallel
Strand 4	C	487	492	anti-parallel
Strand 5	C	480	482	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	283	first strand
Strand 2	C	421	422	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	245	246	first strand
Strand 2	D	504	505	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	272	275	first strand
Strand 2	D	262	267	anti-parallel
Strand 3	D	496	501	anti-parallel
Strand 4	D	487	492	anti-parallel
Strand 5	D	480	482	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	283	first strand
Strand 2	D	421	423	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	155	first strand
Strand 2	F	194	196	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	272	276	first strand
Strand 2	F	262	267	anti-parallel
Strand 3	F	496	501	anti-parallel
Strand 4	F	487	492	anti-parallel
Strand 5	F	480	482	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	282	283	first strand
Strand 2	F	421	422	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UQE

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UQE