Analysis of interatomic Contacts of Structural Units in PDB entry:
5UQF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UQF entry

There are 3 chains in PDB entry 5UQF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0VAL 482
B
 ALA 0VAL 482
C
 ALA 0VAL 482
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 5UQF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 11Right-handed 310
Helix 2
AA2
A
53 64Right-handed alpha
Helix 3
AA3
A
74 87Right-handed alpha
Helix 4
AA4
A
226 236Right-handed alpha
Helix 5
AA5
A
250 264Right-handed alpha
Helix 6
AA6
A
276 286Right-handed alpha
Helix 7
AA7
A
302 308Right-handed alpha
Helix 8
AA8
A
312 325Right-handed alpha
Helix 9
AA9
A
326 328Right-handed 310
Helix 10
AB1
A
339 350Right-handed alpha
Helix 11
AB2
A
357 362Right-handed alpha
Helix 12
AB3
A
386 391Right-handed alpha
Helix 13
AB4
A
422 442Right-handed alpha
Helix 14
AB5
A
445 453Right-handed alpha
Helix 15
AB6
A
459 467Right-handed alpha
Helix 16
AB7
B
9 11Right-handed 310
Helix 17
AB8
B
53 63Right-handed alpha
Helix 18
AB9
B
74 87Right-handed alpha
Helix 19
AC1
B
226 236Right-handed alpha
Helix 20
AC2
B
250 264Right-handed alpha
Helix 21
AC3
B
276 285Right-handed alpha
Helix 22
AC4
B
302 308Right-handed alpha
Helix 23
AC5
B
312 326Right-handed alpha
Helix 24
AC6
B
339 350Right-handed alpha
Helix 25
AC7
B
386 392Right-handed alpha
Helix 26
AC8
B
422 442Right-handed alpha
Helix 27
AC9
B
445 453Right-handed alpha
Helix 28
AD1
B
459 467Right-handed alpha
Helix 29
AD2
C
9 11Right-handed 310
Helix 30
AD3
C
23 27Right-handed 310
Helix 31
AD4
C
53 63Right-handed alpha
Helix 32
AD5
C
74 88Right-handed alpha
Helix 33
AD6
C
226 237Right-handed alpha
Helix 34
AD7
C
250 264Right-handed alpha
Helix 35
AD8
C
276 287Right-handed alpha
Helix 36
AD9
C
302 307Right-handed alpha
Helix 37
AE1
C
312 326Right-handed alpha
Helix 38
AE2
C
339 350Right-handed alpha
Helix 39
AE3
C
357 362Right-handed alpha
Helix 40
AE4
C
386 392Right-handed alpha
Helix 41
AE5
C
422 442Right-handed alpha
Helix 42
AE6
C
445 453Right-handed alpha
Helix 43
AE7
C
459 467Right-handed alpha
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There are 12 sheets in PDB entry 5UQF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 15first strand
Strand 2
A
455 457anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
37 39anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
A
66 69parallel
Strand 3
A
219 222parallel
Strand 4
A
240 244parallel
Strand 5
A
268 274parallel
Strand 6
A
290 293parallel
Strand 7
A
331 334parallel
Strand 8
A
353 356parallel
Strand 9
A
43 45parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 373first strand
Strand 2
A
376 382anti-parallel
Strand 3
A
414 418anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 15first strand
Strand 2
B
455 457anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
38 39anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 45first strand
Strand 2
B
66 69parallel
Strand 3
B
219 222parallel
Strand 4
B
240 244parallel
Strand 5
B
268 274parallel
Strand 6
B
290 293parallel
Strand 7
B
331 334parallel
Strand 8
B
353 356parallel
Strand 9
B
43 45parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
371 373first strand
Strand 2
B
376 382anti-parallel
Strand 3
B
414 418anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 15first strand
Strand 2
C
455 457anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 32first strand
Strand 2
C
38 39anti-parallel
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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 45first strand
Strand 2
C
66 69parallel
Strand 3
C
219 222parallel
Strand 4
C
240 244parallel
Strand 5
C
268 274parallel
Strand 6
C
290 293parallel
Strand 7
C
331 334parallel
Strand 8
C
353 356parallel
Strand 9
C
43 45parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
371 373first strand
Strand 2
C
376 382anti-parallel
Strand 3
C
414 418anti-parallel
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