Analysis of interatomic Contacts of Structural Units in PDB entry:
5UQK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UQK entry

There is 1 chain in PDB entry 5UQK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2THR 538
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5UQK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 13Right-handed alpha
Helix 2
AA2
A
20 35Right-handed alpha
Helix 3
AA3
A
40 62Right-handed alpha
Helix 4
AA4
A
67 89Right-handed alpha
Helix 5
AA5
A
107 121Right-handed alpha
Helix 6
AA6
A
136 156Right-handed alpha
Helix 7
AA7
A
166 193Right-handed alpha
Helix 8
AA8
A
200 213Right-handed alpha
Helix 9
AA9
A
216 233Right-handed alpha
Helix 10
AB1
A
240 242Right-handed 310
Helix 11
AB2
A
247 259Right-handed alpha
Helix 12
AB3
A
263 280Right-handed alpha
Helix 13
AB4
A
294 298Right-handed 310
Helix 14
AB5
A
307 324Right-handed alpha
Helix 15
AB6
A
331 336Right-handed alpha
Helix 16
AB7
A
338 351Right-handed alpha
Helix 17
AB8
A
354 358Right-handed 310
Helix 18
AB9
A
392 418Right-handed alpha
Helix 19
AC1
A
422 436Right-handed alpha
Helix 20
AC2
A
442 450Right-handed alpha
Helix 21
AC3
A
451 455Right-handed 310
Helix 22
AC4
A
462 467Right-handed 310
Helix 23
AC5
A
469 483Right-handed alpha
Helix 24
AC6
A
493 501Right-handed 310
Helix 25
AC7
A
503 507Right-handed 310
Helix 26
AC8
A
511 518Right-handed alpha
Helix 27
AC9
A
522 538Right-handed alpha
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There are 2 sheets in PDB entry 5UQK. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
366 367anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 238first strand
Strand 2
A
125 130parallel
Strand 3
A
96 100parallel
Strand 4
A
281 284parallel
Strand 5
A
380 388anti-parallel
Strand 6
A
373 377anti-parallel
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