Analysis of interatomic Contacts of Structural Units in PDB entry:
5UQM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UQM entry

There is 1 chain in PDB entry 5UQM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 543
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5UQM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 13Right-handed alpha
Helix 2
AA2
A
21 35Right-handed alpha
Helix 3
AA3
A
41 63Right-handed alpha
Helix 4
AA4
A
68 90Right-handed alpha
Helix 5
AA5
A
108 122Right-handed alpha
Helix 6
AA6
A
137 157Right-handed alpha
Helix 7
AA7
A
167 197Right-handed alpha
Helix 8
AA8
A
201 215Right-handed alpha
Helix 9
AA9
A
217 234Right-handed alpha
Helix 10
AB1
A
243 249Right-handed alpha
Helix 11
AB2
A
251 261Right-handed alpha
Helix 12
AB3
A
264 281Right-handed alpha
Helix 13
AB4
A
308 325Right-handed alpha
Helix 14
AB5
A
334 338Right-handed 310
Helix 15
AB6
A
339 352Right-handed alpha
Helix 16
AB7
A
355 359Right-handed 310
Helix 17
AB8
A
393 420Right-handed alpha
Helix 18
AB9
A
423 438Right-handed alpha
Helix 19
AC1
A
443 451Right-handed alpha
Helix 20
AC2
A
452 456Right-handed 310
Helix 21
AC3
A
463 469Right-handed alpha
Helix 22
AC4
A
470 484Right-handed alpha
Helix 23
AC5
A
494 500Right-handed alpha
Helix 24
AC6
A
504 506Right-handed 310
Helix 25
AC7
A
513 517Right-handed 310
Helix 26
AC8
A
523 540Right-handed alpha
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There are 3 sheets in PDB entry 5UQM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
367 368anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 239first strand
Strand 2
A
126 131parallel
Strand 3
A
97 101parallel
Strand 4
A
282 285parallel
Strand 5
A
381 389anti-parallel
Strand 6
A
374 378anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 291first strand
Strand 2
A
508 509anti-parallel
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