Analysis of interatomic Contacts of Structural Units in PDB entry:
5UQO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UQO entry

There are 2 chains in PDB entry 5UQO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 31LYS 464
A
 ALA 31LYS 464
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 5UQO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
34 56Right-handed alpha
Helix 2
AA2
B
66 70Right-handed alpha
Helix 3
AA3
B
98 106Right-handed alpha
Helix 4
AA4
B
116 127Right-handed alpha
Helix 5
AA5
B
131 145Right-handed alpha
Helix 6
AA6
B
149 158Right-handed alpha
Helix 7
AA7
B
164 176Right-handed alpha
Helix 8
AA8
B
177 179Right-handed 310
Helix 9
AA9
B
180 189Right-handed alpha
Helix 10
AB1
B
191 194Right-handed 310
Helix 11
AB2
B
195 219Right-handed alpha
Helix 12
AB3
B
222 229Right-handed alpha
Helix 13
AB4
B
236 245Right-handed alpha
Helix 14
AB5
B
249 251Right-handed 310
Helix 15
AB6
B
252 266Right-handed alpha
Helix 16
AB7
B
273 284Right-handed alpha
Helix 17
AB8
B
288 301Right-handed alpha
Helix 18
AB9
B
302 307Right-handed alpha
Helix 19
AC1
B
307 324Right-handed alpha
Helix 20
AC2
B
328 342Right-handed alpha
Helix 21
AC3
B
358 370Right-handed alpha
Helix 22
AC4
B
371 376Right-handed alpha
Helix 23
AC5
B
377 398Right-handed alpha
Helix 24
AC6
B
407 418Right-handed alpha
Helix 25
AC7
B
422 424Right-handed 310
Helix 26
AC8
B
425 434Right-handed alpha
Helix 27
AC9
B
435 449Right-handed alpha
Helix 28
AD1
A
34 56Right-handed alpha
Helix 29
AD2
A
66 70Right-handed alpha
Helix 30
AD3
A
98 106Right-handed alpha
Helix 31
AD4
A
116 127Right-handed alpha
Helix 32
AD5
A
131 145Right-handed alpha
Helix 33
AD6
A
149 158Right-handed alpha
Helix 34
AD7
A
164 176Right-handed alpha
Helix 35
AD8
A
177 179Right-handed 310
Helix 36
AD9
A
180 189Right-handed alpha
Helix 37
AE1
A
191 194Right-handed 310
Helix 38
AE2
A
195 219Right-handed alpha
Helix 39
AE3
A
222 229Right-handed alpha
Helix 40
AE4
A
236 245Right-handed alpha
Helix 41
AE5
A
249 251Right-handed 310
Helix 42
AE6
A
252 266Right-handed alpha
Helix 43
AE7
A
273 284Right-handed alpha
Helix 44
AE8
A
288 301Right-handed alpha
Helix 45
AE9
A
302 307Right-handed alpha
Helix 46
AF1
A
307 324Right-handed alpha
Helix 47
AF2
A
328 342Right-handed alpha
Helix 48
AF3
A
358 370Right-handed alpha
Helix 49
AF4
A
371 376Right-handed alpha
Helix 50
AF5
A
377 398Right-handed alpha
Helix 51
AF6
A
407 418Right-handed alpha
Helix 52
AF7
A
422 424Right-handed 310
Helix 53
AF8
A
425 434Right-handed alpha
Helix 54
AF9
A
435 449Right-handed alpha
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There are 5 sheets in PDB entry 5UQO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 65first strand
Strand 2
A
60 65anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 80first strand
Strand 2
A
456 458parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 87first strand
Strand 2
B
91 94anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
456 458first strand
Strand 2
A
77 80parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 87first strand
Strand 2
A
91 94anti-parallel
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