Analysis of interatomic Contacts of Structural Units in PDB entry:
5UQQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UQQ entry

There are 3 chains in PDB entry 5UQQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	THR 30	LYS 465
C	SER 29	LYS 465
A	ALA 31	GLN 441

There are169 helices in PDB entry 5UQQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	34	56	Right-handed alpha
Helix 2	AA2	B	66	71	Right-handed alpha
Helix 3	AA3	B	98	106	Right-handed alpha
Helix 4	AA4	B	116	127	Right-handed alpha
Helix 5	AA5	B	131	145	Right-handed alpha
Helix 6	AA6	B	149	159	Right-handed alpha
Helix 7	AA7	B	164	176	Right-handed alpha
Helix 8	AA8	B	177	179	Right-handed 310
Helix 9	AA9	B	180	189	Right-handed alpha
Helix 10	AB1	B	191	194	Right-handed 310
Helix 11	AB2	B	195	219	Right-handed alpha
Helix 12	AB3	B	222	229	Right-handed alpha
Helix 13	AB4	B	236	245	Right-handed alpha
Helix 14	AB5	B	249	251	Right-handed 310
Helix 15	AB6	B	252	266	Right-handed alpha
Helix 16	AB7	B	273	285	Right-handed alpha
Helix 17	AB8	B	288	301	Right-handed alpha
Helix 18	AB9	B	302	307	Right-handed alpha
Helix 19	AC1	B	307	324	Right-handed alpha
Helix 20	AC2	B	328	342	Right-handed alpha
Helix 21	AC3	B	358	370	Right-handed alpha
Helix 22	AC4	B	371	377	Right-handed alpha
Helix 23	AC5	B	377	398	Right-handed alpha
Helix 24	AC6	B	407	418	Right-handed alpha
Helix 25	AC7	B	422	424	Right-handed 310
Helix 26	AC8	B	425	434	Right-handed alpha
Helix 27	AC9	B	435	449	Right-handed alpha
Helix 28	AD1	B	459	465	Right-handed alpha
Helix 29	AD2	C	34	56	Right-handed alpha
Helix 30	AD3	C	66	71	Right-handed alpha
Helix 31	AD4	C	98	106	Right-handed alpha
Helix 32	AD5	C	116	127	Right-handed alpha
Helix 33	AD6	C	131	145	Right-handed alpha
Helix 34	AD7	C	149	159	Right-handed alpha
Helix 35	AD8	C	164	176	Right-handed alpha
Helix 36	AD9	C	177	179	Right-handed 310
Helix 37	AE1	C	180	189	Right-handed alpha
Helix 38	AE2	C	191	194	Right-handed 310
Helix 39	AE3	C	195	219	Right-handed alpha
Helix 40	AE4	C	222	229	Right-handed alpha
Helix 41	AE5	C	236	245	Right-handed alpha
Helix 42	AE6	C	249	251	Right-handed 310
Helix 43	AE7	C	252	266	Right-handed alpha
Helix 44	AE8	C	273	285	Right-handed alpha
Helix 45	AE9	C	288	301	Right-handed alpha
Helix 46	AF1	C	302	307	Right-handed alpha
Helix 47	AF2	C	307	324	Right-handed alpha
Helix 48	AF3	C	328	342	Right-handed alpha
Helix 49	AF4	C	358	370	Right-handed alpha
Helix 50	AF5	C	371	377	Right-handed alpha
Helix 51	AF6	C	377	398	Right-handed alpha
Helix 52	AF7	C	407	418	Right-handed alpha
Helix 53	AF8	C	422	424	Right-handed 310
Helix 54	AF9	C	425	434	Right-handed alpha
Helix 55	AG1	C	435	449	Right-handed alpha
Helix 56	AG2	C	459	465	Right-handed alpha
Helix 57	AG3	A	34	56	Right-handed alpha
Helix 58	AG4	A	66	71	Right-handed alpha
Helix 59	AG5	A	98	106	Right-handed alpha
Helix 60	AG6	A	116	127	Right-handed alpha
Helix 61	AG7	A	131	145	Right-handed alpha
Helix 62	AG8	A	149	159	Right-handed alpha
Helix 63	AG9	A	164	176	Right-handed alpha
Helix 64	AH1	A	177	179	Right-handed 310
Helix 65	AH2	A	180	189	Right-handed alpha
Helix 66	AH3	A	191	194	Right-handed 310
Helix 67	AH4	A	195	219	Right-handed alpha
Helix 68	AH5	A	222	229	Right-handed alpha
Helix 69	AH6	A	236	245	Right-handed alpha
Helix 70	AH7	A	249	251	Right-handed 310
Helix 71	AH8	A	252	266	Right-handed alpha
Helix 72	AH9	A	273	285	Right-handed alpha
Helix 73	AI1	A	288	301	Right-handed alpha
Helix 74	AI2	A	302	307	Right-handed alpha
Helix 75	AI3	A	307	324	Right-handed alpha
Helix 76	AI4	A	328	342	Right-handed alpha
Helix 77	AI5	A	358	370	Right-handed alpha
Helix 78	AI6	A	371	377	Right-handed alpha
Helix 79	AI7	A	377	398	Right-handed alpha
Helix 80	AI8	A	407	418	Right-handed alpha
Helix 81	AI9	A	422	424	Right-handed 310
Helix 82	AJ1	A	425	434	Right-handed alpha
Helix 83	AJ2	A	435	449	Right-handed alpha
Helix 84	AJ3	A	459	464	Right-handed alpha
Helix 85	AJ4	D	34	56	Right-handed alpha
Helix 86	AJ5	D	66	71	Right-handed alpha
Helix 87	AJ6	D	98	106	Right-handed alpha
Helix 88	AJ7	D	116	127	Right-handed alpha
Helix 89	AJ8	D	131	145	Right-handed alpha
Helix 90	AJ9	D	149	159	Right-handed alpha
Helix 91	AK1	D	164	176	Right-handed alpha
Helix 92	AK2	D	177	179	Right-handed 310
Helix 93	AK3	D	180	189	Right-handed alpha
Helix 94	AK4	D	191	194	Right-handed 310
Helix 95	AK5	D	195	219	Right-handed alpha
Helix 96	AK6	D	222	229	Right-handed alpha
Helix 97	AK7	D	236	245	Right-handed alpha
Helix 98	AK8	D	249	251	Right-handed 310
Helix 99	AK9	D	252	266	Right-handed alpha
Helix 100	AL1	D	273	285	Right-handed alpha
Helix 101	AL2	D	288	301	Right-handed alpha
Helix 102	AL3	D	302	307	Right-handed alpha
Helix 103	AL4	D	307	324	Right-handed alpha
Helix 104	AL5	D	328	342	Right-handed alpha
Helix 105	AL6	D	358	370	Right-handed alpha
Helix 106	AL7	D	371	377	Right-handed alpha
Helix 107	AL8	D	377	398	Right-handed alpha
Helix 108	AL9	D	406	409	Right-handed 310
Helix 109	AM1	D	410	418	Right-handed alpha
Helix 110	AM2	D	422	424	Right-handed 310
Helix 111	AM3	D	425	434	Right-handed alpha
Helix 112	AM4	D	435	449	Right-handed alpha
Helix 113	AM5	D	459	464	Right-handed alpha
Helix 114	AM6	E	34	56	Right-handed alpha
Helix 115	AM7	E	66	71	Right-handed alpha
Helix 116	AM8	E	98	106	Right-handed alpha
Helix 117	AM9	E	116	127	Right-handed alpha
Helix 118	AN1	E	131	145	Right-handed alpha
Helix 119	AN2	E	149	159	Right-handed alpha
Helix 120	AN3	E	164	176	Right-handed alpha
Helix 121	AN4	E	177	179	Right-handed 310
Helix 122	AN5	E	180	189	Right-handed alpha
Helix 123	AN6	E	191	194	Right-handed 310
Helix 124	AN7	E	195	219	Right-handed alpha
Helix 125	AN8	E	222	229	Right-handed alpha
Helix 126	AN9	E	236	245	Right-handed alpha
Helix 127	AO1	E	249	251	Right-handed 310
Helix 128	AO2	E	252	266	Right-handed alpha
Helix 129	AO3	E	273	285	Right-handed alpha
Helix 130	AO4	E	288	301	Right-handed alpha
Helix 131	AO5	E	302	307	Right-handed alpha
Helix 132	AO6	E	307	324	Right-handed alpha
Helix 133	AO7	E	328	342	Right-handed alpha
Helix 134	AO8	E	358	370	Right-handed alpha
Helix 135	AO9	E	371	377	Right-handed alpha
Helix 136	AP1	E	377	398	Right-handed alpha
Helix 137	AP2	E	407	418	Right-handed alpha
Helix 138	AP3	E	422	424	Right-handed 310
Helix 139	AP4	E	425	434	Right-handed alpha
Helix 140	AP5	E	435	449	Right-handed alpha
Helix 141	AP6	E	459	464	Right-handed alpha
Helix 142	AP7	F	34	56	Right-handed alpha
Helix 143	AP8	F	66	71	Right-handed alpha
Helix 144	AP9	F	98	106	Right-handed alpha
Helix 145	AQ1	F	116	127	Right-handed alpha
Helix 146	AQ2	F	131	145	Right-handed alpha
Helix 147	AQ3	F	149	159	Right-handed alpha
Helix 148	AQ4	F	164	176	Right-handed alpha
Helix 149	AQ5	F	177	179	Right-handed 310
Helix 150	AQ6	F	180	189	Right-handed alpha
Helix 151	AQ7	F	191	194	Right-handed 310
Helix 152	AQ8	F	195	219	Right-handed alpha
Helix 153	AQ9	F	222	229	Right-handed alpha
Helix 154	AR1	F	236	245	Right-handed alpha
Helix 155	AR2	F	249	251	Right-handed 310
Helix 156	AR3	F	252	266	Right-handed alpha
Helix 157	AR4	F	273	285	Right-handed alpha
Helix 158	AR5	F	288	301	Right-handed alpha
Helix 159	AR6	F	302	307	Right-handed alpha
Helix 160	AR7	F	307	324	Right-handed alpha
Helix 161	AR8	F	328	342	Right-handed alpha
Helix 162	AR9	F	358	370	Right-handed alpha
Helix 163	AS1	F	371	377	Right-handed alpha
Helix 164	AS2	F	377	398	Right-handed alpha
Helix 165	AS3	F	407	418	Right-handed alpha
Helix 166	AS4	F	422	424	Right-handed 310
Helix 167	AS5	F	425	434	Right-handed alpha
Helix 168	AS6	F	435	449	Right-handed alpha
Helix 169	AS7	F	459	465	Right-handed alpha

There are 15 sheets in PDB entry 5UQQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	65	first strand
Strand 2	C	60	65	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	80	first strand
Strand 2	C	456	458	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	87	first strand
Strand 2	B	91	94	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	458	first strand
Strand 2	C	77	80	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	87	first strand
Strand 2	C	91	94	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	65	first strand
Strand 2	D	60	65	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	80	first strand
Strand 2	D	456	458	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	87	first strand
Strand 2	A	91	94	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	458	first strand
Strand 2	D	77	80	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	87	first strand
Strand 2	D	91	94	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	65	first strand
Strand 2	F	60	65	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	80	first strand
Strand 2	F	456	458	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	87	first strand
Strand 2	E	91	94	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	456	458	first strand
Strand 2	F	77	80	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	87	first strand
Strand 2	F	91	94	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UQQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UQQ