Analysis of interatomic Contacts of Structural Units in PDB entry:
5UR9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UR9 entry

There are 8 chains in PDB entry 5UR9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	GLU 135
B	ALA 2	VAL 134
C	ALA 2	GLU 135
D	ALA 2	GLU 135
E	SER -1	GLU 135
F	GLY -2	GLU 135
G	SER -1	GLU 135
H	SER -1	GLU 135

There are 24 helices in PDB entry 5UR9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	7	Right-handed 310
Helix 2	AA2	A	18	27	Right-handed alpha
Helix 3	AA3	A	29	39	Right-handed alpha
Helix 4	AA4	B	3	8	Right-handed 310
Helix 5	AA5	B	18	27	Right-handed alpha
Helix 6	AA6	B	29	39	Right-handed alpha
Helix 7	AA7	C	3	8	Right-handed 310
Helix 8	AA8	C	18	27	Right-handed alpha
Helix 9	AA9	C	29	39	Right-handed alpha
Helix 10	AB1	D	3	8	Right-handed 310
Helix 11	AB2	D	18	27	Right-handed alpha
Helix 12	AB3	D	29	39	Right-handed alpha
Helix 13	AB4	E	3	8	Right-handed 310
Helix 14	AB5	E	18	26	Right-handed alpha
Helix 15	AB6	E	29	39	Right-handed alpha
Helix 16	AB7	F	3	8	Right-handed 310
Helix 17	AB8	F	18	27	Right-handed alpha
Helix 18	AB9	F	29	39	Right-handed alpha
Helix 19	AC1	G	3	8	Right-handed 310
Helix 20	AC2	G	18	27	Right-handed alpha
Helix 21	AC3	G	29	39	Right-handed alpha
Helix 22	AC4	H	3	8	Right-handed 310
Helix 23	AC5	H	18	26	Right-handed alpha
Helix 24	AC6	H	29	39	Right-handed alpha

There are 6 sheets in PDB entry 5UR9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	68	first strand
Strand 2	A	51	58	anti-parallel
Strand 3	A	42	47	anti-parallel
Strand 4	A	9	17	anti-parallel
Strand 5	A	125	135	anti-parallel
Strand 6	A	115	122	anti-parallel
Strand 7	A	103	112	anti-parallel
Strand 8	A	93	100	anti-parallel
Strand 9	A	82	90	anti-parallel
Strand 10	A	73	76	anti-parallel

Back to list of sheets
Back to top of page

There are 20 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	76	first strand
Strand 2	B	82	90	anti-parallel
Strand 3	B	93	100	anti-parallel
Strand 4	B	103	112	anti-parallel
Strand 5	B	115	122	anti-parallel
Strand 6	B	125	134	anti-parallel
Strand 7	B	9	15	anti-parallel
Strand 8	B	42	47	anti-parallel
Strand 9	B	51	58	anti-parallel
Strand 10	B	61	68	anti-parallel
Strand 11	G	62	68	parallel
Strand 12	G	51	57	anti-parallel
Strand 13	G	42	48	anti-parallel
Strand 14	G	9	17	anti-parallel
Strand 15	G	125	134	anti-parallel
Strand 16	G	115	122	anti-parallel
Strand 17	G	103	112	anti-parallel
Strand 18	G	93	100	anti-parallel
Strand 19	G	82	90	anti-parallel
Strand 20	G	73	76	anti-parallel

Back to list of sheets
Back to top of page

There are 20 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	76	first strand
Strand 2	C	82	90	anti-parallel
Strand 3	C	93	100	anti-parallel
Strand 4	C	103	112	anti-parallel
Strand 5	C	115	122	anti-parallel
Strand 6	C	125	133	anti-parallel
Strand 7	C	9	17	anti-parallel
Strand 8	C	42	47	anti-parallel
Strand 9	C	51	58	anti-parallel
Strand 10	C	61	68	anti-parallel
Strand 11	E	62	68	parallel
Strand 12	E	51	57	anti-parallel
Strand 13	E	42	48	anti-parallel
Strand 14	E	9	17	anti-parallel
Strand 15	E	125	134	anti-parallel
Strand 16	E	115	122	anti-parallel
Strand 17	E	103	112	anti-parallel
Strand 18	E	93	100	anti-parallel
Strand 19	E	82	90	anti-parallel
Strand 20	E	73	76	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	68	first strand
Strand 2	D	51	58	anti-parallel
Strand 3	D	42	47	anti-parallel
Strand 4	D	9	17	anti-parallel
Strand 5	D	125	133	anti-parallel
Strand 6	D	115	122	anti-parallel
Strand 7	D	103	112	anti-parallel
Strand 8	D	93	100	anti-parallel
Strand 9	D	82	90	anti-parallel
Strand 10	D	73	76	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	62	68	first strand
Strand 2	F	51	57	anti-parallel
Strand 3	F	42	48	anti-parallel
Strand 4	F	9	17	anti-parallel
Strand 5	F	125	134	anti-parallel
Strand 6	F	115	122	anti-parallel
Strand 7	F	103	112	anti-parallel
Strand 8	F	93	100	anti-parallel
Strand 9	F	82	90	anti-parallel
Strand 10	F	73	76	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	62	68	first strand
Strand 2	H	51	57	anti-parallel
Strand 3	H	42	48	anti-parallel
Strand 4	H	9	17	anti-parallel
Strand 5	H	125	134	anti-parallel
Strand 6	H	115	122	anti-parallel
Strand 7	H	103	112	anti-parallel
Strand 8	H	93	100	anti-parallel
Strand 9	H	82	90	anti-parallel
Strand 10	H	73	76	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UR9

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UR9