Analysis of interatomic Contacts of Structural Units in PDB entry:
5URB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5URB entry

There are 2 chains in PDB entry 5URB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 546
B
 MET 1LYS 546
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 5URB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 38Right-handed alpha
Helix 2
AA2
A
52 62Right-handed alpha
Helix 3
AA3
A
65 84Right-handed alpha
Helix 4
AA4
A
96 114Right-handed alpha
Helix 5
AA5
A
134 136Right-handed 310
Helix 6
AA6
A
163 167Right-handed 310
Helix 7
AA7
A
191 193Right-handed 310
Helix 8
AA8
A
194 202Right-handed alpha
Helix 9
AA9
A
211 223Right-handed alpha
Helix 10
AB1
A
249 270Right-handed alpha
Helix 11
AB2
A
275 280Right-handed alpha
Helix 12
AB3
A
295 301Right-handed alpha
Helix 13
AB4
A
301 310Right-handed alpha
Helix 14
AB5
A
340 346Right-handed alpha
Helix 15
AB6
A
349 361Right-handed alpha
Helix 16
AB7
A
371 383Right-handed alpha
Helix 17
AB8
A
386 402Right-handed alpha
Helix 18
AB9
A
412 422Right-handed alpha
Helix 19
AC1
A
422 432Right-handed alpha
Helix 20
AC2
A
434 457Right-handed alpha
Helix 21
AC3
A
457 462Right-handed alpha
Helix 22
AC4
A
467 490Right-handed alpha
Helix 23
AC5
A
493 505Right-handed alpha
Helix 24
AC6
A
511 516Right-handed 310
Helix 25
AC7
A
534 545Right-handed alpha
Helix 26
AC8
B
21 38Right-handed alpha
Helix 27
AC9
B
52 62Right-handed alpha
Helix 28
AD1
B
65 84Right-handed alpha
Helix 29
AD2
B
96 114Right-handed alpha
Helix 30
AD3
B
134 136Right-handed 310
Helix 31
AD4
B
163 167Right-handed 310
Helix 32
AD5
B
191 193Right-handed 310
Helix 33
AD6
B
194 202Right-handed alpha
Helix 34
AD7
B
209 211Right-handed 310
Helix 35
AD8
B
212 223Right-handed alpha
Helix 36
AD9
B
249 270Right-handed alpha
Helix 37
AE1
B
274 280Right-handed alpha
Helix 38
AE2
B
295 301Right-handed alpha
Helix 39
AE3
B
301 310Right-handed alpha
Helix 40
AE4
B
340 346Right-handed alpha
Helix 41
AE5
B
349 361Right-handed alpha
Helix 42
AE6
B
371 383Right-handed alpha
Helix 43
AE7
B
386 402Right-handed alpha
Helix 44
AE8
B
412 422Right-handed alpha
Helix 45
AE9
B
422 432Right-handed alpha
Helix 46
AF1
B
434 457Right-handed alpha
Helix 47
AF2
B
457 462Right-handed alpha
Helix 48
AF3
B
467 490Right-handed alpha
Helix 49
AF4
B
493 505Right-handed alpha
Helix 50
AF5
B
511 516Right-handed 310
Helix 51
AF6
B
534 545Right-handed alpha
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There are 10 sheets in PDB entry 5URB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
42 48parallel
Strand 3
A
4 8parallel
Strand 4
A
286 292parallel
Strand 5
A
317 321parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
116 126anti-parallel
Strand 3
A
180 189anti-parallel
Strand 4
A
227 228anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
138 141anti-parallel
Strand 3
A
168 172anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 232first strand
Strand 2
A
246 248anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 326first strand
Strand 2
A
368 370parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 93first strand
Strand 2
B
42 48parallel
Strand 3
B
4 8parallel
Strand 4
B
286 292parallel
Strand 5
B
317 321parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 132first strand
Strand 2
B
116 126anti-parallel
Strand 3
B
180 189anti-parallel
Strand 4
B
227 228anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 151first strand
Strand 2
B
138 141anti-parallel
Strand 3
B
168 172anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 232first strand
Strand 2
B
246 248anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 326first strand
Strand 2
B
368 370parallel
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