Analysis of interatomic Contacts of Structural Units in PDB entry:
5URM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5URM entry

There are 2 chains in PDB entry 5URM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 404	ASP 2125
B	ALA 404	ASP 2125

There are167 helices in PDB entry 5URM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	410	415	Right-handed alpha
Helix 2	AA2	A	418	422	Right-handed 310
Helix 3	AA3	A	463	467	Right-handed 310
Helix 4	AA4	A	468	472	Right-handed 310
Helix 5	AA5	A	482	495	Right-handed alpha
Helix 6	AA6	A	508	522	Right-handed alpha
Helix 7	AA7	A	532	536	Right-handed 310
Helix 8	AA8	A	544	560	Right-handed alpha
Helix 9	AA9	A	561	563	Right-handed 310
Helix 10	AB1	A	574	582	Right-handed alpha
Helix 11	AB2	A	589	597	Right-handed alpha
Helix 12	AB3	A	602	607	Right-handed alpha
Helix 13	AB4	A	616	622	Right-handed 310
Helix 14	AB5	A	624	643	Right-handed alpha
Helix 15	AB6	A	657	665	Right-handed alpha
Helix 16	AB7	A	677	681	Right-handed 310
Helix 17	AB8	A	696	714	Right-handed alpha
Helix 18	AB9	A	727	741	Right-handed alpha
Helix 19	AC1	A	760	767	Right-handed alpha
Helix 20	AC2	A	773	778	Right-handed alpha
Helix 21	AC3	A	790	803	Right-handed alpha
Helix 22	AC4	A	812	819	Right-handed alpha
Helix 23	AC5	A	845	854	Right-handed alpha
Helix 24	AC6	A	875	884	Right-handed alpha
Helix 25	AC7	A	892	907	Right-handed alpha
Helix 26	AC8	A	912	921	Right-handed alpha
Helix 27	AC9	A	923	932	Right-handed alpha
Helix 28	AD1	A	939	946	Right-handed alpha
Helix 29	AD2	A	949	967	Right-handed alpha
Helix 30	AD3	A	982	991	Right-handed alpha
Helix 31	AD4	A	994	1005	Right-handed alpha
Helix 32	AD5	A	1010	1020	Right-handed alpha
Helix 33	AD6	A	1021	1025	Right-handed 310
Helix 34	AD7	A	1030	1044	Right-handed alpha
Helix 35	AD8	A	1054	1069	Right-handed alpha
Helix 36	AD9	A	1074	1103	Right-handed alpha
Helix 37	AE1	A	1104	1121	Right-handed alpha
Helix 38	AE2	A	1127	1132	Right-handed 310
Helix 39	AE3	A	1136	1146	Right-handed alpha
Helix 40	AE4	A	1149	1156	Right-handed 310
Helix 41	AE5	A	1157	1165	Right-handed alpha
Helix 42	AE6	A	1170	1179	Right-handed alpha
Helix 43	AE7	A	1211	1216	Right-handed alpha
Helix 44	AE8	A	1308	1312	Right-handed 310
Helix 45	AE9	A	1314	1319	Right-handed alpha
Helix 46	AF1	A	1329	1341	Right-handed alpha
Helix 47	AF2	A	1356	1371	Right-handed alpha
Helix 48	AF3	A	1382	1397	Right-handed alpha
Helix 49	AF4	A	1411	1422	Right-handed alpha
Helix 50	AF5	A	1428	1437	Right-handed alpha
Helix 51	AF6	A	1442	1447	Right-handed alpha
Helix 52	AF7	A	1455	1461	Right-handed 310
Helix 53	AF8	A	1463	1481	Right-handed alpha
Helix 54	AF9	A	1496	1505	Right-handed alpha
Helix 55	AG1	A	1507	1509	Right-handed 310
Helix 56	AG2	A	1515	1519	Right-handed 310
Helix 57	AG3	A	1534	1542	Right-handed alpha
Helix 58	AG4	A	1542	1554	Right-handed alpha
Helix 59	AG5	A	1565	1583	Right-handed alpha
Helix 60	AG6	A	1593	1602	Right-handed alpha
Helix 61	AG7	A	1606	1615	Right-handed alpha
Helix 62	AG8	A	1625	1638	Right-handed alpha
Helix 63	AG9	A	1649	1651	Right-handed 310
Helix 64	AH1	A	1680	1690	Right-handed alpha
Helix 65	AH2	A	1710	1718	Right-handed alpha
Helix 66	AH3	A	1727	1730	Right-handed 310
Helix 67	AH4	A	1731	1742	Right-handed alpha
Helix 68	AH5	A	1747	1756	Right-handed alpha
Helix 69	AH6	A	1758	1767	Right-handed alpha
Helix 70	AH7	A	1768	1772	Right-handed 310
Helix 71	AH8	A	1777	1799	Right-handed alpha
Helix 72	AH9	A	1813	1822	Right-handed alpha
Helix 73	AI1	A	1825	1836	Right-handed alpha
Helix 74	AI2	A	1841	1850	Right-handed alpha
Helix 75	AI3	A	1851	1858	Right-handed 310
Helix 76	AI4	A	1863	1874	Right-handed alpha
Helix 77	AI5	A	1886	1900	Right-handed alpha
Helix 78	AI6	A	1905	1933	Right-handed alpha
Helix 79	AI7	A	1935	1951	Right-handed alpha
Helix 80	AI8	A	1958	1963	Right-handed 310
Helix 81	AI9	A	1981	1986	Right-handed alpha
Helix 82	AJ1	A	1990	1994	Right-handed 310
Helix 83	AJ2	A	2001	2012	Right-handed alpha
Helix 84	AJ3	B	410	415	Right-handed alpha
Helix 85	AJ4	B	418	422	Right-handed 310
Helix 86	AJ5	B	463	467	Right-handed 310
Helix 87	AJ6	B	468	475	Right-handed 310
Helix 88	AJ7	B	482	495	Right-handed alpha
Helix 89	AJ8	B	509	522	Right-handed alpha
Helix 90	AJ9	B	523	524	Right-handed 310
Helix 91	AK1	B	525	529	Right-handed 310
Helix 92	AK2	B	532	536	Right-handed 310
Helix 93	AK3	B	544	560	Right-handed alpha
Helix 94	AK4	B	561	563	Right-handed 310
Helix 95	AK5	B	574	582	Right-handed alpha
Helix 96	AK6	B	589	598	Right-handed alpha
Helix 97	AK7	B	602	607	Right-handed alpha
Helix 98	AK8	B	616	622	Right-handed 310
Helix 99	AK9	B	624	643	Right-handed alpha
Helix 100	AL1	B	657	665	Right-handed alpha
Helix 101	AL2	B	677	681	Right-handed 310
Helix 102	AL3	B	697	713	Right-handed alpha
Helix 103	AL4	B	727	742	Right-handed alpha
Helix 104	AL5	B	773	778	Right-handed alpha
Helix 105	AL6	B	790	803	Right-handed alpha
Helix 106	AL7	B	812	819	Right-handed alpha
Helix 107	AL8	B	845	854	Right-handed alpha
Helix 108	AL9	B	875	884	Right-handed alpha
Helix 109	AM1	B	892	907	Right-handed alpha
Helix 110	AM2	B	912	921	Right-handed alpha
Helix 111	AM3	B	923	932	Right-handed alpha
Helix 112	AM4	B	939	946	Right-handed alpha
Helix 113	AM5	B	949	967	Right-handed alpha
Helix 114	AM6	B	982	991	Right-handed alpha
Helix 115	AM7	B	994	1005	Right-handed alpha
Helix 116	AM8	B	1010	1020	Right-handed alpha
Helix 117	AM9	B	1021	1025	Right-handed 310
Helix 118	AN1	B	1030	1044	Right-handed alpha
Helix 119	AN2	B	1054	1069	Right-handed alpha
Helix 120	AN3	B	1074	1103	Right-handed alpha
Helix 121	AN4	B	1104	1121	Right-handed alpha
Helix 122	AN5	B	1127	1132	Right-handed 310
Helix 123	AN6	B	1136	1146	Right-handed alpha
Helix 124	AN7	B	1149	1156	Right-handed 310
Helix 125	AN8	B	1157	1165	Right-handed alpha
Helix 126	AN9	B	1167	1169	Right-handed 310
Helix 127	AO1	B	1170	1181	Right-handed alpha
Helix 128	AO2	B	1211	1216	Right-handed alpha
Helix 129	AO3	B	1308	1312	Right-handed 310
Helix 130	AO4	B	1314	1319	Right-handed alpha
Helix 131	AO5	B	1329	1335	Right-handed alpha
Helix 132	AO6	B	1335	1341	Right-handed alpha
Helix 133	AO7	B	1356	1371	Right-handed alpha
Helix 134	AO8	B	1382	1398	Right-handed alpha
Helix 135	AO9	B	1411	1422	Right-handed alpha
Helix 136	AP1	B	1428	1437	Right-handed alpha
Helix 137	AP2	B	1438	1441	Right-handed 310
Helix 138	AP3	B	1442	1447	Right-handed alpha
Helix 139	AP4	B	1456	1461	Right-handed 310
Helix 140	AP5	B	1463	1480	Right-handed alpha
Helix 141	AP6	B	1496	1505	Right-handed alpha
Helix 142	AP7	B	1515	1519	Right-handed 310
Helix 143	AP8	B	1534	1542	Right-handed alpha
Helix 144	AP9	B	1542	1554	Right-handed alpha
Helix 145	AQ1	B	1565	1583	Right-handed alpha
Helix 146	AQ2	B	1593	1602	Right-handed alpha
Helix 147	AQ3	B	1606	1615	Right-handed alpha
Helix 148	AQ4	B	1625	1638	Right-handed alpha
Helix 149	AQ5	B	1649	1651	Right-handed 310
Helix 150	AQ6	B	1680	1690	Right-handed alpha
Helix 151	AQ7	B	1708	1718	Right-handed alpha
Helix 152	AQ8	B	1727	1730	Right-handed 310
Helix 153	AQ9	B	1731	1742	Right-handed alpha
Helix 154	AR1	B	1747	1756	Right-handed alpha
Helix 155	AR2	B	1758	1767	Right-handed alpha
Helix 156	AR3	B	1768	1772	Right-handed 310
Helix 157	AR4	B	1777	1799	Right-handed alpha
Helix 158	AR5	B	1813	1822	Right-handed alpha
Helix 159	AR6	B	1825	1836	Right-handed alpha
Helix 160	AR7	B	1841	1850	Right-handed alpha
Helix 161	AR8	B	1851	1856	Right-handed 310
Helix 162	AR9	B	1863	1874	Right-handed alpha
Helix 163	AS1	B	1886	1900	Right-handed alpha
Helix 164	AS2	B	1905	1933	Right-handed alpha
Helix 165	AS3	B	1935	1951	Right-handed alpha
Helix 166	AS4	B	1958	1963	Right-handed 310
Helix 167	AS5	B	2001	2012	Right-handed alpha

There are 24 sheets in PDB entry 5URM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	438	first strand
Strand 2	A	442	447	anti-parallel
Strand 3	A	685	692	anti-parallel
Strand 4	A	865	872	parallel
Strand 5	A	825	829	parallel
Strand 6	A	721	724	parallel
Strand 7	A	808	811	parallel
Strand 8	A	782	785	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	566	568	first strand
Strand 2	A	585	588	parallel
Strand 3	A	537	541	parallel
Strand 4	A	609	614	parallel
Strand 5	A	647	653	parallel
Strand 6	A	499	503	parallel
Strand 7	A	673	675	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	832	835	first strand
Strand 2	A	840	843	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	970	972	first strand
Strand 2	A	979	981	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1184	1194	first strand
Strand 2	A	1197	1206	anti-parallel
Strand 3	A	1250	1257	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1233	1242	first strand
Strand 2	A	1218	1226	anti-parallel
Strand 3	A	1265	1272	anti-parallel
Strand 4	A	1279	1285	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1405	1407	first strand
Strand 2	A	1424	1427	parallel
Strand 3	A	1376	1379	parallel
Strand 4	A	1450	1453	parallel
Strand 5	A	1486	1491	parallel
Strand 6	A	1346	1349	parallel
Strand 7	A	1511	1513	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1523	1530	first strand
Strand 2	A	1700	1707	parallel
Strand 3	A	1660	1664	parallel
Strand 4	A	1559	1563	parallel
Strand 5	A	1643	1647	parallel
Strand 6	A	1617	1620	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1667	1670	first strand
Strand 2	A	1675	1678	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1802	1805	first strand
Strand 2	A	1809	1812	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2019	2023	first strand
Strand 2	A	2034	2042	anti-parallel
Strand 3	A	2087	2095	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2075	2082	first strand
Strand 2	A	2064	2070	anti-parallel
Strand 3	A	2102	2110	anti-parallel
Strand 4	A	2118	2124	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	438	first strand
Strand 2	B	442	447	anti-parallel
Strand 3	B	685	692	anti-parallel
Strand 4	B	865	872	parallel
Strand 5	B	825	829	parallel
Strand 6	B	721	724	parallel
Strand 7	B	808	811	parallel
Strand 8	B	783	785	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	566	568	first strand
Strand 2	B	585	588	parallel
Strand 3	B	537	541	parallel
Strand 4	B	609	614	parallel
Strand 5	B	647	653	parallel
Strand 6	B	499	503	parallel
Strand 7	B	673	675	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	832	835	first strand
Strand 2	B	840	843	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	970	972	first strand
Strand 2	B	979	981	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1184	1194	first strand
Strand 2	B	1197	1206	anti-parallel
Strand 3	B	1250	1257	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1233	1242	first strand
Strand 2	B	1218	1226	anti-parallel
Strand 3	B	1265	1272	anti-parallel
Strand 4	B	1279	1285	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1405	1407	first strand
Strand 2	B	1424	1427	parallel
Strand 3	B	1376	1379	parallel
Strand 4	B	1450	1454	parallel
Strand 5	B	1486	1491	parallel
Strand 6	B	1346	1349	parallel
Strand 7	B	1511	1513	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1523	1530	first strand
Strand 2	B	1700	1707	parallel
Strand 3	B	1660	1664	parallel
Strand 4	B	1559	1563	parallel
Strand 5	B	1643	1647	parallel
Strand 6	B	1617	1620	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1667	1670	first strand
Strand 2	B	1675	1678	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1802	1805	first strand
Strand 2	B	1809	1812	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2018	2023	first strand
Strand 2	B	2034	2042	anti-parallel
Strand 3	B	2090	2095	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2075	2082	first strand
Strand 2	B	2064	2070	anti-parallel
Strand 3	B	2102	2110	anti-parallel
Strand 4	B	2118	2124	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5URM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5URM