Analysis of interatomic Contacts of Structural Units in PDB entry:
5URQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5URQ entry

There are 4 chains in PDB entry 5URQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 0	VAL 482
B	ASN -1	LYS 481
C	ALA 0	TYR 480
D	ALA 0	MET 390

There are115 helices in PDB entry 5URQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	11	Right-handed 310
Helix 2	AA2	A	23	27	Right-handed 310
Helix 3	AA3	A	53	63	Right-handed alpha
Helix 4	AA4	A	74	87	Right-handed alpha
Helix 5	AA5	A	226	236	Right-handed alpha
Helix 6	AA6	A	250	264	Right-handed alpha
Helix 7	AA7	A	276	287	Right-handed alpha
Helix 8	AA8	A	302	308	Right-handed alpha
Helix 9	AA9	A	312	326	Right-handed alpha
Helix 10	AB1	A	339	350	Right-handed alpha
Helix 11	AB2	A	387	391	Right-handed 310
Helix 12	AB3	A	422	442	Right-handed alpha
Helix 13	AB4	A	445	453	Right-handed alpha
Helix 14	AB5	A	459	467	Right-handed alpha
Helix 15	AB6	B	9	11	Right-handed 310
Helix 16	AB7	B	23	27	Right-handed 310
Helix 17	AB8	B	53	63	Right-handed alpha
Helix 18	AB9	B	74	87	Right-handed alpha
Helix 19	AC1	B	226	236	Right-handed alpha
Helix 20	AC2	B	250	264	Right-handed alpha
Helix 21	AC3	B	276	287	Right-handed alpha
Helix 22	AC4	B	302	308	Right-handed alpha
Helix 23	AC5	B	312	327	Right-handed alpha
Helix 24	AC6	B	339	350	Right-handed alpha
Helix 25	AC7	B	386	391	Right-handed alpha
Helix 26	AC8	B	422	442	Right-handed alpha
Helix 27	AC9	B	445	453	Right-handed alpha
Helix 28	AD1	B	459	465	Right-handed alpha
Helix 29	AD2	C	9	11	Right-handed 310
Helix 30	AD3	C	23	27	Right-handed 310
Helix 31	AD4	C	53	63	Right-handed alpha
Helix 32	AD5	C	74	87	Right-handed alpha
Helix 33	AD6	C	226	237	Right-handed alpha
Helix 34	AD7	C	250	264	Right-handed alpha
Helix 35	AD8	C	276	286	Right-handed alpha
Helix 36	AD9	C	302	307	Right-handed alpha
Helix 37	AE1	C	312	326	Right-handed alpha
Helix 38	AE2	C	339	350	Right-handed alpha
Helix 39	AE3	C	357	362	Right-handed alpha
Helix 40	AE4	C	386	391	Right-handed alpha
Helix 41	AE5	C	422	442	Right-handed alpha
Helix 42	AE6	C	445	453	Right-handed alpha
Helix 43	AE7	C	459	467	Right-handed alpha
Helix 44	AE8	D	9	11	Right-handed 310
Helix 45	AE9	D	53	63	Right-handed alpha
Helix 46	AF1	D	74	88	Right-handed alpha
Helix 47	AF2	D	226	236	Right-handed alpha
Helix 48	AF3	D	250	264	Right-handed alpha
Helix 49	AF4	D	276	286	Right-handed alpha
Helix 50	AF5	D	302	308	Right-handed alpha
Helix 51	AF6	D	312	325	Right-handed alpha
Helix 52	AF7	D	326	328	Right-handed 310
Helix 53	AF8	D	339	350	Right-handed alpha
Helix 54	AF9	D	357	361	Right-handed 310
Helix 55	AG1	D	422	442	Right-handed alpha
Helix 56	AG2	D	445	453	Right-handed alpha
Helix 57	AG3	D	459	467	Right-handed alpha
Helix 58	AG4	E	9	11	Right-handed 310
Helix 59	AG5	E	23	27	Right-handed 310
Helix 60	AG6	E	53	63	Right-handed alpha
Helix 61	AG7	E	74	87	Right-handed alpha
Helix 62	AG8	E	226	237	Right-handed alpha
Helix 63	AG9	E	250	264	Right-handed alpha
Helix 64	AH1	E	276	287	Right-handed alpha
Helix 65	AH2	E	302	307	Right-handed alpha
Helix 66	AH3	E	312	326	Right-handed alpha
Helix 67	AH4	E	339	350	Right-handed alpha
Helix 68	AH5	E	386	396	Right-handed alpha
Helix 69	AH6	E	422	442	Right-handed alpha
Helix 70	AH7	E	445	453	Right-handed alpha
Helix 71	AH8	E	459	467	Right-handed alpha
Helix 72	AH9	F	9	11	Right-handed 310
Helix 73	AI1	F	23	27	Right-handed 310
Helix 74	AI2	F	53	63	Right-handed alpha
Helix 75	AI3	F	74	87	Right-handed alpha
Helix 76	AI4	F	226	237	Right-handed alpha
Helix 77	AI5	F	250	264	Right-handed alpha
Helix 78	AI6	F	276	287	Right-handed alpha
Helix 79	AI7	F	302	308	Right-handed alpha
Helix 80	AI8	F	312	326	Right-handed alpha
Helix 81	AI9	F	339	350	Right-handed alpha
Helix 82	AJ1	F	357	362	Right-handed alpha
Helix 83	AJ2	F	386	391	Right-handed alpha
Helix 84	AJ3	F	422	442	Right-handed alpha
Helix 85	AJ4	F	445	453	Right-handed alpha
Helix 86	AJ5	F	459	467	Right-handed alpha
Helix 87	AJ6	H	9	11	Right-handed 310
Helix 88	AJ7	H	23	27	Right-handed 310
Helix 89	AJ8	H	53	63	Right-handed alpha
Helix 90	AJ9	H	74	87	Right-handed alpha
Helix 91	AK1	H	226	235	Right-handed alpha
Helix 92	AK2	H	250	262	Right-handed alpha
Helix 93	AK3	H	276	286	Right-handed alpha
Helix 94	AK4	H	302	308	Right-handed alpha
Helix 95	AK5	H	312	326	Right-handed alpha
Helix 96	AK6	H	339	350	Right-handed alpha
Helix 97	AK7	H	357	362	Right-handed alpha
Helix 98	AK8	H	386	391	Right-handed alpha
Helix 99	AK9	H	422	442	Right-handed alpha
Helix 100	AL1	H	445	453	Right-handed alpha
Helix 101	AL2	H	459	467	Right-handed alpha
Helix 102	AL3	G	9	11	Right-handed 310
Helix 103	AL4	G	53	63	Right-handed alpha
Helix 104	AL5	G	74	88	Right-handed alpha
Helix 105	AL6	G	226	237	Right-handed alpha
Helix 106	AL7	G	250	264	Right-handed alpha
Helix 107	AL8	G	276	287	Right-handed alpha
Helix 108	AL9	G	302	307	Right-handed alpha
Helix 109	AM1	G	312	325	Right-handed alpha
Helix 110	AM2	G	326	328	Right-handed 310
Helix 111	AM3	G	339	350	Right-handed alpha
Helix 112	AM4	G	386	391	Right-handed alpha
Helix 113	AM5	G	422	442	Right-handed alpha
Helix 114	AM6	G	445	453	Right-handed alpha
Helix 115	AM7	G	459	467	Right-handed alpha

There are 32 sheets in PDB entry 5URQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	D	455	458	parallel
Strand 3	D	13	15	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	15	first strand
Strand 2	A	455	458	anti-parallel
Strand 3	B	3	7	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	A	38	39	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	66	69	parallel
Strand 3	A	219	222	parallel
Strand 4	A	240	244	parallel
Strand 5	A	268	274	parallel
Strand 6	A	290	293	parallel
Strand 7	A	331	334	parallel
Strand 8	A	353	356	parallel
Strand 9	A	43	45	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	373	first strand
Strand 2	A	376	382	anti-parallel
Strand 3	A	414	418	anti-parallel
Strand 4	D	472	475	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	473	first strand
Strand 2	B	414	418	anti-parallel
Strand 3	B	376	382	anti-parallel
Strand 4	B	371	373	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	15	first strand
Strand 2	B	455	458	anti-parallel
Strand 3	C	3	7	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	34	first strand
Strand 2	B	37	39	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	45	first strand
Strand 2	B	66	69	parallel
Strand 3	B	219	222	parallel
Strand 4	B	240	244	parallel
Strand 5	B	268	274	parallel
Strand 6	B	290	293	parallel
Strand 7	B	331	334	parallel
Strand 8	B	353	356	parallel
Strand 9	B	43	45	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	475	first strand
Strand 2	C	414	418	anti-parallel
Strand 3	C	376	382	anti-parallel
Strand 4	C	371	373	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	455	458	anti-parallel
Strand 3	D	3	7	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	32	first strand
Strand 2	C	38	39	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	45	first strand
Strand 2	C	66	69	parallel
Strand 3	C	219	222	parallel
Strand 4	C	240	243	parallel
Strand 5	C	268	274	parallel
Strand 6	C	291	293	parallel
Strand 7	C	331	334	parallel
Strand 8	C	353	356	parallel
Strand 9	C	43	45	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	472	475	first strand
Strand 2	D	414	418	anti-parallel
Strand 3	D	377	382	anti-parallel
Strand 4	D	371	372	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	32	first strand
Strand 2	D	38	39	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	45	first strand
Strand 2	D	66	69	parallel
Strand 3	D	219	222	parallel
Strand 4	D	240	243	parallel
Strand 5	D	268	274	parallel
Strand 6	D	290	293	parallel
Strand 7	D	331	334	parallel
Strand 8	D	353	356	parallel
Strand 9	D	43	45	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	H	455	458	parallel
Strand 3	H	13	15	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	15	first strand
Strand 2	E	455	457	anti-parallel
Strand 3	F	3	6	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	32	first strand
Strand 2	E	38	39	anti-parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	45	first strand
Strand 2	E	66	69	parallel
Strand 3	E	219	222	parallel
Strand 4	E	240	243	parallel
Strand 5	E	268	274	parallel
Strand 6	E	290	293	parallel
Strand 7	E	331	334	parallel
Strand 8	E	353	356	parallel
Strand 9	E	43	45	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	371	373	first strand
Strand 2	E	376	382	anti-parallel
Strand 3	E	414	418	anti-parallel
Strand 4	H	472	473	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	472	475	first strand
Strand 2	F	414	418	anti-parallel
Strand 3	F	376	382	anti-parallel
Strand 4	F	371	373	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	15	first strand
Strand 2	F	455	458	anti-parallel
Strand 3	G	3	7	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	32	first strand
Strand 2	F	38	39	anti-parallel

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There are 9 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	45	first strand
Strand 2	F	66	69	parallel
Strand 3	F	219	222	parallel
Strand 4	F	240	244	parallel
Strand 5	F	268	274	parallel
Strand 6	F	291	293	parallel
Strand 7	F	331	334	parallel
Strand 8	F	353	356	parallel
Strand 9	F	43	45	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	472	473	first strand
Strand 2	G	414	418	anti-parallel
Strand 3	G	376	382	anti-parallel
Strand 4	G	371	373	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	G	455	457	parallel
Strand 3	G	13	15	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	31	32	first strand
Strand 2	H	38	39	anti-parallel

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There are 9 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	43	45	first strand
Strand 2	H	66	69	parallel
Strand 3	H	219	222	parallel
Strand 4	H	240	243	parallel
Strand 5	H	268	274	parallel
Strand 6	H	290	293	parallel
Strand 7	H	331	334	parallel
Strand 8	H	353	356	parallel
Strand 9	H	43	45	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	371	373	first strand
Strand 2	H	376	382	anti-parallel
Strand 3	H	414	418	anti-parallel
Strand 4	G	472	475	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	31	32	first strand
Strand 2	G	38	39	anti-parallel

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There are 9 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	45	first strand
Strand 2	G	66	69	parallel
Strand 3	G	219	222	parallel
Strand 4	G	240	243	parallel
Strand 5	G	268	274	parallel
Strand 6	G	290	293	parallel
Strand 7	G	331	334	parallel
Strand 8	G	353	356	parallel
Strand 9	G	43	45	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5URQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5URQ