Analysis of interatomic Contacts of Structural Units in PDB entry:
5US8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5US8 entry

There are 2 chains in PDB entry 5US8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2ASP 442
B
 SER -2ASP 442
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5US8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 34Right-handed alpha
Helix 2
AA2
A
54 63Right-handed alpha
Helix 3
AA3
A
73 87Right-handed alpha
Helix 4
AA4
A
101 121Right-handed alpha
Helix 5
AA5
A
135 148Right-handed alpha
Helix 6
AA6
A
156 158Right-handed 310
Helix 7
AA7
A
159 166Right-handed alpha
Helix 8
AA8
A
168 179Right-handed alpha
Helix 9
AA9
A
205 209Right-handed 310
Helix 10
AB1
A
213 217Right-handed 310
Helix 11
AB2
A
256 270Right-handed alpha
Helix 12
AB3
A
294 312Right-handed alpha
Helix 13
AB4
A
313 334Right-handed alpha
Helix 14
AB5
A
338 352Right-handed alpha
Helix 15
AB6
A
353 356Right-handed 310
Helix 16
AB7
A
383 388Right-handed 310
Helix 17
AB8
A
398 408Right-handed alpha
Helix 18
AB9
A
409 426Right-handed alpha
Helix 19
AC1
B
21 34Right-handed alpha
Helix 20
AC2
B
54 63Right-handed alpha
Helix 21
AC3
B
73 87Right-handed alpha
Helix 22
AC4
B
101 121Right-handed alpha
Helix 23
AC5
B
135 148Right-handed alpha
Helix 24
AC6
B
156 158Right-handed 310
Helix 25
AC7
B
159 166Right-handed alpha
Helix 26
AC8
B
168 179Right-handed alpha
Helix 27
AC9
B
205 209Right-handed 310
Helix 28
AD1
B
213 217Right-handed 310
Helix 29
AD2
B
256 270Right-handed alpha
Helix 30
AD3
B
294 312Right-handed alpha
Helix 31
AD4
B
313 334Right-handed alpha
Helix 32
AD5
B
338 352Right-handed alpha
Helix 33
AD6
B
353 356Right-handed 310
Helix 34
AD7
B
383 388Right-handed 310
Helix 35
AD8
B
398 408Right-handed alpha
Helix 36
AD9
B
409 426Right-handed alpha
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There are 10 sheets in PDB entry 5US8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
152 154parallel
Strand 3
A
125 127parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 17first strand
Strand 2
A
37 44parallel
Strand 3
A
67 72parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
97 99anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 195first strand
Strand 2
A
200 203anti-parallel
Strand 3
A
287 293anti-parallel
Strand 4
A
276 281anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
245 249anti-parallel
Strand 3
A
235 242anti-parallel
Strand 4
A
358 364anti-parallel
Strand 5
A
370 376anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
152 154parallel
Strand 3
B
125 127parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 17first strand
Strand 2
B
37 44parallel
Strand 3
B
67 72parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
97 99anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 195first strand
Strand 2
B
200 203anti-parallel
Strand 3
B
287 293anti-parallel
Strand 4
B
276 281anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 253first strand
Strand 2
B
245 249anti-parallel
Strand 3
B
235 242anti-parallel
Strand 4
B
358 364anti-parallel
Strand 5
B
370 376anti-parallel
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