Analysis of interatomic Contacts of Structural Units in PDB entry:
5USR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5USR entry

There are 9 chains in PDB entry 5USR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 54	HIS 257
A	ILE 259	ASP 445
B	SER 4	ASP 79
C	LEU 56	HIS 257
C	ILE 259	GLN 444
D	SER 4	ILE 83
E	PRO 47	HIS 257
E	ILE 259	MET 436
F	SER 4	LEU 63

There are 81 helices in PDB entry 5USR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	63	67	Right-handed 310
Helix 2	AA2	A	70	85	Right-handed alpha
Helix 3	AA3	A	94	115	Right-handed alpha
Helix 4	AA4	A	117	119	Right-handed 310
Helix 5	AA5	A	126	142	Right-handed alpha
Helix 6	AA6	A	156	170	Right-handed alpha
Helix 7	AA7	A	185	191	Right-handed alpha
Helix 8	AA8	A	214	225	Right-handed alpha
Helix 9	AA9	A	257	260	Right-handed 310
Helix 10	AB1	A	297	337	Right-handed alpha
Helix 11	AB2	A	345	349	Right-handed 310
Helix 12	AB3	A	389	395	Right-handed alpha
Helix 13	AB4	A	398	404	Right-handed alpha
Helix 14	AB5	A	415	435	Right-handed alpha
Helix 15	AB6	A	438	443	Right-handed alpha
Helix 16	AB7	B	5	21	Right-handed alpha
Helix 17	AB8	B	25	43	Right-handed alpha
Helix 18	AB9	B	48	77	Right-handed alpha
Helix 19	AC1	C	70	83	Right-handed alpha
Helix 20	AC2	C	97	115	Right-handed alpha
Helix 21	AC3	C	117	119	Right-handed 310
Helix 22	AC4	C	126	142	Right-handed alpha
Helix 23	AC5	C	156	170	Right-handed alpha
Helix 24	AC6	C	185	191	Right-handed alpha
Helix 25	AC7	C	214	225	Right-handed alpha
Helix 26	AC8	C	257	260	Right-handed 310
Helix 27	AC9	C	297	337	Right-handed alpha
Helix 28	AD1	C	345	349	Right-handed 310
Helix 29	AD2	C	363	371	Right-handed alpha
Helix 30	AD3	C	399	404	Right-handed alpha
Helix 31	AD4	C	415	435	Right-handed alpha
Helix 32	AD5	C	437	442	Right-handed alpha
Helix 33	AD6	D	5	21	Right-handed alpha
Helix 34	AD7	D	25	43	Right-handed alpha
Helix 35	AD8	D	44	46	Right-handed 310
Helix 36	AD9	D	48	77	Right-handed alpha
Helix 37	AE1	E	70	84	Right-handed alpha
Helix 38	AE2	E	96	115	Right-handed alpha
Helix 39	AE3	E	117	119	Right-handed 310
Helix 40	AE4	E	126	142	Right-handed alpha
Helix 41	AE5	E	156	170	Right-handed alpha
Helix 42	AE6	E	185	191	Right-handed alpha
Helix 43	AE7	E	214	225	Right-handed alpha
Helix 44	AE8	E	297	335	Right-handed alpha
Helix 45	AE9	E	345	349	Right-handed 310
Helix 46	AF1	E	415	435	Right-handed alpha
Helix 47	AF2	F	5	21	Right-handed alpha
Helix 48	AF3	F	25	43	Right-handed alpha
Helix 49	AF4	F	44	46	Right-handed 310
Helix 50	AF5	F	48	77	Right-handed alpha
Helix 51	AF6	G	70	83	Right-handed alpha
Helix 52	AF7	G	99	115	Right-handed alpha
Helix 53	AF8	G	117	119	Right-handed 310
Helix 54	AF9	G	126	142	Right-handed alpha
Helix 55	AG1	G	156	170	Right-handed alpha
Helix 56	AG2	G	185	191	Right-handed alpha
Helix 57	AG3	G	214	225	Right-handed alpha
Helix 58	AG4	G	257	259	Right-handed 310
Helix 59	AG5	G	297	337	Right-handed alpha
Helix 60	AG6	G	415	436	Right-handed alpha
Helix 61	AG7	H	5	21	Right-handed alpha
Helix 62	AG8	H	25	43	Right-handed alpha
Helix 63	AG9	H	48	77	Right-handed alpha
Helix 64	AH1	I	5	17	Right-handed alpha
Helix 65	AH2	I	28	33	Right-handed alpha
Helix 66	AH3	I	36	51	Right-handed alpha
Helix 67	AH4	I	56	62	Right-handed alpha
Helix 68	AH5	I	65	74	Right-handed alpha
Helix 69	AH6	J	4	17	Right-handed alpha
Helix 70	AH7	J	28	33	Right-handed alpha
Helix 71	AH8	J	36	51	Right-handed alpha
Helix 72	AH9	J	56	62	Right-handed alpha
Helix 73	AI1	J	65	74	Right-handed alpha
Helix 74	AI2	K	6	16	Right-handed alpha
Helix 75	AI3	K	36	51	Right-handed alpha
Helix 76	AI4	K	56	62	Right-handed alpha
Helix 77	AI5	K	65	70	Right-handed alpha
Helix 78	AI6	L	4	16	Right-handed alpha
Helix 79	AI7	L	36	51	Right-handed alpha
Helix 80	AI8	L	56	62	Right-handed alpha
Helix 81	AI9	L	65	70	Right-handed alpha

There are 10 sheets in PDB entry 5USR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	124	first strand
Strand 2	A	266	270	anti-parallel
Strand 3	A	251	255	anti-parallel
Strand 4	A	228	232	parallel
Strand 5	A	197	201	parallel
Strand 6	A	148	152	parallel
Strand 7	A	172	176	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	342	first strand
Strand 2	A	353	358	anti-parallel
Strand 3	A	405	409	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	124	first strand
Strand 2	C	266	270	anti-parallel
Strand 3	C	251	255	anti-parallel
Strand 4	C	228	232	parallel
Strand 5	C	197	201	parallel
Strand 6	C	148	152	parallel
Strand 7	C	172	176	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	342	first strand
Strand 2	C	353	358	anti-parallel
Strand 3	C	405	409	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	121	124	first strand
Strand 2	E	266	270	anti-parallel
Strand 3	E	251	255	anti-parallel
Strand 4	E	228	232	parallel
Strand 5	E	197	201	parallel
Strand 6	E	148	152	parallel
Strand 7	E	172	176	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	205	206	first strand
Strand 2	E	211	212	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	340	342	first strand
Strand 2	E	353	358	anti-parallel
Strand 3	E	405	409	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	121	124	first strand
Strand 2	G	266	270	anti-parallel
Strand 3	G	251	255	anti-parallel
Strand 4	G	228	232	parallel
Strand 5	G	197	201	parallel
Strand 6	G	148	152	parallel
Strand 7	G	172	176	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	205	206	first strand
Strand 2	G	211	212	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	341	342	first strand
Strand 2	G	353	357	anti-parallel
Strand 3	G	405	409	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5USR

Analysis of interatomic Contacts of Structural Units in PDB entry:
5USR