Analysis of interatomic Contacts of Structural Units in PDB entry:
5UTM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UTM entry

There are 4 chains in PDB entry 5UTM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER -8	LYS 336
B	VAL 2	ILE 334
C	VAL 2	ILE 334
D	VAL 2	ALA 335

There are 54 helices in PDB entry 5UTM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	22	Right-handed alpha
Helix 2	AA2	A	37	47	Right-handed alpha
Helix 3	AA3	A	79	83	Right-handed 310
Helix 4	AA4	A	84	89	Right-handed 310
Helix 5	AA5	A	102	107	Right-handed alpha
Helix 6	AA6	A	108	110	Right-handed 310
Helix 7	AA7	A	136	140	Right-handed 310
Helix 8	AA8	A	151	169	Right-handed alpha
Helix 9	AA9	A	217	221	Right-handed 310
Helix 10	AB1	A	222	226	Right-handed 310
Helix 11	AB2	A	255	266	Right-handed alpha
Helix 12	AB3	A	279	284	Right-handed 310
Helix 13	AB4	A	295	297	Right-handed 310
Helix 14	AB5	A	317	335	Right-handed alpha
Helix 15	AB6	B	11	22	Right-handed alpha
Helix 16	AB7	B	37	47	Right-handed alpha
Helix 17	AB8	B	79	83	Right-handed 310
Helix 18	AB9	B	84	89	Right-handed 310
Helix 19	AC1	B	102	107	Right-handed alpha
Helix 20	AC2	B	108	110	Right-handed 310
Helix 21	AC3	B	136	140	Right-handed 310
Helix 22	AC4	B	151	169	Right-handed alpha
Helix 23	AC5	B	217	221	Right-handed 310
Helix 24	AC6	B	222	226	Right-handed 310
Helix 25	AC7	B	255	267	Right-handed alpha
Helix 26	AC8	B	279	284	Right-handed 310
Helix 27	AC9	B	295	297	Right-handed 310
Helix 28	AD1	B	317	334	Right-handed alpha
Helix 29	AD2	C	11	22	Right-handed alpha
Helix 30	AD3	C	37	47	Right-handed alpha
Helix 31	AD4	C	79	83	Right-handed 310
Helix 32	AD5	C	84	89	Right-handed 310
Helix 33	AD6	C	102	108	Right-handed alpha
Helix 34	AD7	C	136	140	Right-handed 310
Helix 35	AD8	C	151	169	Right-handed alpha
Helix 36	AD9	C	217	221	Right-handed 310
Helix 37	AE1	C	222	226	Right-handed 310
Helix 38	AE2	C	255	266	Right-handed alpha
Helix 39	AE3	C	279	284	Right-handed 310
Helix 40	AE4	C	295	297	Right-handed 310
Helix 41	AE5	C	317	334	Right-handed alpha
Helix 42	AE6	D	11	22	Right-handed alpha
Helix 43	AE7	D	37	47	Right-handed alpha
Helix 44	AE8	D	79	83	Right-handed 310
Helix 45	AE9	D	84	89	Right-handed 310
Helix 46	AF1	D	102	108	Right-handed alpha
Helix 47	AF2	D	136	140	Right-handed 310
Helix 48	AF3	D	151	168	Right-handed alpha
Helix 49	AF4	D	217	221	Right-handed 310
Helix 50	AF5	D	222	226	Right-handed 310
Helix 51	AF6	D	255	266	Right-handed alpha
Helix 52	AF7	D	279	284	Right-handed 310
Helix 53	AF8	D	295	297	Right-handed 310
Helix 54	AF9	D	317	335	Right-handed alpha

There are 12 sheets in PDB entry 5UTM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	61	first strand
Strand 2	A	64	67	anti-parallel
Strand 3	A	70	75	anti-parallel
Strand 4	A	27	33	parallel
Strand 5	A	3	8	parallel
Strand 6	A	92	95	parallel
Strand 7	A	117	120	parallel
Strand 8	A	146	148	parallel
Strand 9	A	129	130	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	210	first strand
Strand 2	A	229	236	anti-parallel
Strand 3	A	170	180	parallel
Strand 4	A	242	250	anti-parallel
Strand 5	A	305	314	anti-parallel
Strand 6	A	290	293	anti-parallel
Strand 7	A	271	274	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	210	first strand
Strand 2	A	229	236	anti-parallel
Strand 3	A	170	180	parallel
Strand 4	A	242	250	anti-parallel
Strand 5	A	305	314	anti-parallel
Strand 6	A	298	302	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	61	first strand
Strand 2	B	64	67	anti-parallel
Strand 3	B	70	75	anti-parallel
Strand 4	B	27	33	parallel
Strand 5	B	3	8	parallel
Strand 6	B	92	95	parallel
Strand 7	B	117	120	parallel
Strand 8	B	146	148	parallel
Strand 9	B	129	130	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	210	first strand
Strand 2	B	229	236	anti-parallel
Strand 3	B	170	180	parallel
Strand 4	B	242	250	anti-parallel
Strand 5	B	305	314	anti-parallel
Strand 6	B	290	293	anti-parallel
Strand 7	B	271	274	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	210	first strand
Strand 2	B	229	236	anti-parallel
Strand 3	B	170	180	parallel
Strand 4	B	242	250	anti-parallel
Strand 5	B	305	314	anti-parallel
Strand 6	B	298	302	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	61	first strand
Strand 2	C	64	67	anti-parallel
Strand 3	C	70	75	anti-parallel
Strand 4	C	27	33	parallel
Strand 5	C	3	8	parallel
Strand 6	C	92	95	parallel
Strand 7	C	117	120	parallel
Strand 8	C	146	148	parallel
Strand 9	C	129	130	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	210	first strand
Strand 2	C	229	236	anti-parallel
Strand 3	C	170	180	parallel
Strand 4	C	242	250	anti-parallel
Strand 5	C	305	314	anti-parallel
Strand 6	C	290	293	anti-parallel
Strand 7	C	271	274	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	210	first strand
Strand 2	C	229	236	anti-parallel
Strand 3	C	170	180	parallel
Strand 4	C	242	250	anti-parallel
Strand 5	C	305	314	anti-parallel
Strand 6	C	298	302	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	61	first strand
Strand 2	D	64	67	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	27	33	parallel
Strand 5	D	3	8	parallel
Strand 6	D	92	95	parallel
Strand 7	D	117	120	parallel
Strand 8	D	146	148	parallel
Strand 9	D	129	130	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	210	first strand
Strand 2	D	229	236	anti-parallel
Strand 3	D	170	180	parallel
Strand 4	D	242	250	anti-parallel
Strand 5	D	305	314	anti-parallel
Strand 6	D	290	293	anti-parallel
Strand 7	D	271	274	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	210	first strand
Strand 2	D	229	236	anti-parallel
Strand 3	D	170	180	parallel
Strand 4	D	242	250	anti-parallel
Strand 5	D	305	314	anti-parallel
Strand 6	D	298	302	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UTM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UTM