Analysis of interatomic Contacts of Structural Units in PDB entry:
5UTP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UTP entry

There are 2 chains in PDB entry 5UTP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3LEU 341
B
 LYS 2ALA 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 5UTP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 27Right-handed alpha
Helix 2
AA2
A
36 40Right-handed 310
Helix 3
AA3
A
42 57Right-handed alpha
Helix 4
AA4
A
84 95Right-handed alpha
Helix 5
AA5
A
95 117Right-handed alpha
Helix 6
AA6
A
137 141Right-handed 310
Helix 7
AA7
A
145 163Right-handed alpha
Helix 8
AA8
A
192 200Right-handed alpha
Helix 9
AA9
A
201 208Right-handed alpha
Helix 10
AB1
A
209 211Right-handed 310
Helix 11
AB2
A
228 231Right-handed 310
Helix 12
AB3
A
232 237Right-handed alpha
Helix 13
AB4
A
257 261Right-handed 310
Helix 14
AB5
A
265 277Right-handed alpha
Helix 15
AB6
A
286 297Right-handed alpha
Helix 16
AB7
A
302 311Right-handed alpha
Helix 17
AB8
A
320 325Right-handed alpha
Helix 18
AB9
A
327 341Right-handed alpha
Helix 19
AC1
B
18 26Right-handed alpha
Helix 20
AC2
B
36 40Right-handed 310
Helix 21
AC3
B
42 57Right-handed alpha
Helix 22
AC4
B
84 95Right-handed alpha
Helix 23
AC5
B
95 117Right-handed alpha
Helix 24
AC6
B
137 141Right-handed 310
Helix 25
AC7
B
145 163Right-handed alpha
Helix 26
AC8
B
192 199Right-handed alpha
Helix 27
AC9
B
201 208Right-handed alpha
Helix 28
AD1
B
209 211Right-handed 310
Helix 29
AD2
B
228 231Right-handed 310
Helix 30
AD3
B
232 237Right-handed alpha
Helix 31
AD4
B
257 262Right-handed 310
Helix 32
AD5
B
265 277Right-handed alpha
Helix 33
AD6
B
286 297Right-handed alpha
Helix 34
AD7
B
302 311Right-handed alpha
Helix 35
AD8
B
320 325Right-handed alpha
Helix 36
AD9
B
327 341Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 5UTP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
A
61 64parallel
Strand 3
A
30 35parallel
Strand 4
A
8 10parallel
Strand 5
A
281 282parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
71 72anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 172first strand
Strand 2
A
213 216parallel
Strand 3
A
249 250parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 122first strand
Strand 2
B
61 64parallel
Strand 3
B
30 35parallel
Strand 4
B
8 10parallel
Strand 5
B
281 282parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 68first strand
Strand 2
B
71 72anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 172first strand
Strand 2
B
213 216parallel
Strand 3
B
249 250parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 189first strand
Strand 2
B
220 221parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il